Classification and analysis of human ovarian tissue using full field optical coherence tomography

Sreyankar Nandy, Melinda Sanders, and Quing Zhu

Biomed. Opt. Express 7(12), 5182-5187 (2016)  View: HTML | PDF

Active-passive path-length encoded (APPLE) Doppler OCT

Andreas Wartak, Richard Haindl, Wolfgang Trasischker, Bernhard Baumann, Michael Pircher, and Christoph K. Hitzenberger

Biomed. Opt. Express 7(12), 5233-5251 (2016)  View: HTML | PDF

Computational fluid dynamics assisted characterization of parafoveal hemodynamics in normal and diabetic eyes using adaptive optics scanning laser ophthalmoscopy

Yang Lu, Miguel O. Bernabeu, Jan Lammer, Charles C. Cai, Martin L. Jones, Claudio A. Franco, Lloyd Paul Aiello, and Jennifer K. Sun

Biomed. Opt. Express 7(12), 4958-4973 (2016)  View: HTML | PDF  [Suppl. Mat. (1)]

Automatic selection of regularization parameters for dynamic fluorescence molecular tomography: a comparison of L-curve and U-curve methods

Maomao Chen, Han Su, Yuan Zhou, Chuangjian Cai, Dong Zhang, and Jianwen Luo

Biomed. Opt. Express 7(12), 5021-5041 (2016)  View: HTML | PDF

Region-based diffuse optical tomography with registered atlas: in vivo acquisition of mouse optical properties

Wenbo Wan, Yihan Wang, Jin Qi, Lingling Liu, Wenjuan Ma, Jiao Li, Limin Zhang, Zhongxing Zhou, Huijuan Zhao, and Feng Gao

Biomed. Opt. Express 7(12), 5066-5080 (2016)  View: HTML | PDF

Accurate measurement of the pulse wave delay with imaging photoplethysmography

Alexei A. Kamshilin, Igor S. Sidorov, Laura Babayan, Maxim A. Volynsky, Rashid Giniatullin, and Oleg V. Mamontov

Biomed. Opt. Express 7(12), 5138-5147 (2016)  View: HTML | PDF

Local motion-compensated method for high-quality 3D coronary artery reconstruction

Bo Liu, Xiangzhi Bai, and Fugen Zhou

Biomed. Opt. Express 7(12), 5268-5283 (2016)  View: HTML | PDF

Water-equivalent fiber radiation dosimeter with two scintillating materials

Zhuang Qin, Yaosheng Hu, Yu Ma, Wei Lin, Xianping Luo, Wenhui Zhao, Weimin Sun, Daxin Zhang, Ziyin Chen, Boran Wang, and Elfed Lewis

Biomed. Opt. Express 7(12), 4919-4927 (2016)  View: HTML | PDF

Ultrafast time-stretch imaging at 932 nm through a new highly-dispersive fiber

Xiaoming Wei, Cihang Kong, Samuel Sy, Ho Ko, Kevin K. Tsia, and Kenneth K. Y. Wong

Biomed. Opt. Express 7(12), 5208-5217 (2016)  View: HTML | PDF

Imaging behind opaque obstacle: a potential method for guided in vitro needle placement

Sandeep Menon Perinchery, Anant Shinde, and Murukeshan Vadakke Matham

Biomed. Opt. Express 7(12), 5308-5324 (2016)  View: HTML | PDF  [Suppl. Mat. (6)]

Combined microfluidic-optical DNA analysis with single-base-pair sizing capability

Markus Pollnau, Manfred Hammer, Chaitanya Dongre, and Hugo J. W. M. Hoekstra

Biomed. Opt. Express 7(12), 5201-5207 (2016)  View: HTML | PDF

Supra-organization and optical anisotropies of the extracellular matrix in the amniotic membrane and limbal stroma before and after explant culture

Gisele P. Valdetaro, Marcela Aldrovani, Ivan R. M. Padua, Priscila C. Cristovam, José A. P. Gomes, and José L. Laus

Biomed. Opt. Express 7(12), 4982-4994 (2016)  View: HTML | PDF

GPU accelerated real-time confocal fluorescence lifetime imaging microscopy (FLIM) based on the analog mean-delay (AMD) method

Byungyeon Kim, Byungjun Park, Seungrag Lee, and Youngjae Won

Biomed. Opt. Express 7(12), 5055-5065 (2016)  View: HTML | PDF  [Suppl. Mat. (2)]

Volumetric optical mapping in early embryonic hearts using light-sheet microscopy

Pei Ma, Dennis C. Chan, Shi Gu, Michiko Watanabe, Michael W. Jenkins, and Andrew M. Rollins

Biomed. Opt. Express 7(12), 5120-5128 (2016)  View: HTML | PDF  [Suppl. Mat. (3)]

Light-sheet-based 2D light scattering cytometry for label-free characterization of senescent cells

Meiai Lin, Xu Qiao, Qiao Liu, Changshun Shao, and Xuantao Su

Biomed. Opt. Express 7(12), 5170-5181 (2016)  View: HTML | PDF

Efficient multi-site two-photon functional imaging of neuronal circuits

Michael Lawrence Castanares, Vini Gautam, Jack Drury, Hans Bachor, and Vincent R. Daria

Biomed. Opt. Express 7(12), 5325-5334 (2016)  View: HTML | PDF

Fractional laser photothermolysis using Bessel beams

Charles Mignon, Aura Higuera Rodriguez, Jonathan A. Palero, Babu Varghese, and Martin Jurna

Biomed. Opt. Express 7(12), 4974-4981 (2016)  View: HTML | PDF  [Suppl. Mat. (1)]

Segmentation guided registration of wide field-of-view retinal optical coherence tomography volumes

José Lezama, Dibyendu Mukherjee, Ryan P. McNabb, Guillermo Sapiro, Anthony N. Kuo, and Sina Farsiu

Biomed. Opt. Express 7(12), 4827-4846 (2016)  View: HTML | PDF

Single cardiac cycle three-dimensional intracoronary optical coherence tomography

Tae Shik Kim, Hyun-Sang Park, Sun-Joo Jang, Joon Woo Song, Han Saem Cho, Sunwon Kim, Brett E. Bouma, Jin Won Kim, and Wang-Yuhl Oh

Biomed. Opt. Express 7(12), 4847-4858 (2016)  View: HTML | PDF

Cerebral capillary velocimetry based on temporal OCT speckle contrast

Woo June Choi, Yuandong Li, Wan Qin, and Ruikang K. Wang

Biomed. Opt. Express 7(12), 4859-4873 (2016)  View: HTML | PDF  [Suppl. Mat. (1)]

In vivo label-free lymphangiography of cutaneous lymphatic vessels in human burn scars using optical coherence tomography

Peijun Gong, Shaghayegh Es’haghian, Karl-Anton Harms, Alexandra Murray, Suzanne Rea, Fiona M. Wood, David D. Sampson, and Robert A. McLaughlin

Biomed. Opt. Express 7(12), 4886-4898 (2016)  View: HTML | PDF  [Suppl. Mat. (4)]

Machine learning based detection of age-related macular degeneration (AMD) and diabetic macular edema (DME) from optical coherence tomography (OCT) images

Yu Wang, Yaonan Zhang, Zhaomin Yao, Ruixue Zhao, and Fengfeng Zhou

Biomed. Opt. Express 7(12), 4928-4940 (2016)  View: HTML | PDF

Registration of free-hand OCT daughter endoscopy to 3D organ reconstruction

Kristen L. Lurie, Roland Angst, Eric J. Seibel, Joseph C. Liao, and Audrey K. Ellerbee Bowden

Biomed. Opt. Express 7(12), 4995-5009 (2016)  View: HTML | PDF

Spectrometer calibration for spectroscopic Fourier domain optical coherence tomography

Maciej Szkulmowski, Szymon Tamborski, and Maciej Wojtkowski

Biomed. Opt. Express 7(12), 5042-5054 (2016)  View: HTML | PDF

Multimodal registration of SD-OCT volumes and fundus photographs using histograms of oriented gradients

Mohammad Saleh Miri, Michael D. Abràmoff, Young H. Kwon, and Mona K. Garvin

Biomed. Opt. Express 7(12), 5252-5267 (2016)  View: HTML | PDF

Multiplexed fluorescence readout using time responses of color coded signals for biomolecular detection

Takahiro Nishimura, Yusuke Ogura, and Jun Tanida

Biomed. Opt. Express 7(12), 5284-5293 (2016)  View: HTML | PDF

Preclinical detection of liver fibrosis using dual-modality photoacoustic/ultrasound system

Pim J. van den Berg, Ruchi Bansal, Khalid Daoudi, Wiendelt Steenbergen, and Jai Prakash

Biomed. Opt. Express 7(12), 5081-5091 (2016)  View: HTML | PDF  [Suppl. Mat. (2)]

Robust respiration detection from remote photoplethysmography

Mark van Gastel, Sander Stuijk, and Gerard de Haan

Biomed. Opt. Express 7(12), 4941-4957 (2016)  View: HTML | PDF

Spectral-spatial fusion model for robust blood pulse waveform extraction in photoplethysmographic imaging

Robert Amelard, David A. Clausi, and Alexander Wong

Biomed. Opt. Express 7(12), 4874-4885 (2016)  View: HTML | PDF

Human skull translucency: post mortem studies

P. Sawosz, S. Wojtkiewicz, M. Kacprzak, W. Weigl, A. Borowska-Solonynko, P. Krajewski, K. Bejm, D. Milej, B. Ciszek, R. Maniewski, and A. Liebert

Biomed. Opt. Express 7(12), 5010-5020 (2016)  View: HTML | PDF

PHOEBE: a method for real time mapping of optodes-scalp coupling in functional near-infrared spectroscopy

Luca Pollonini, Heather Bortfeld, and John S. Oghalai

Biomed. Opt. Express 7(12), 5104-5119 (2016)  View: HTML | PDF

Raman spectroscopy detects distant invasive brain cancer cells centimeters beyond MRI capability in humans

Michael Jermyn, Joannie Desroches, Jeanne Mercier, Karl St-Arnaud, Marie-Christine Guiot, Frederic Leblond, and Kevin Petrecca

Biomed. Opt. Express 7(12), 5129-5137 (2016)  View: HTML | PDF

Using DRS during breast conserving surgery: identifying robust optical parameters and influence of inter-patient variation

Lisanne L. de Boer, Benno H. W. Hendriks, Frederieke van Duijnhoven, Marie-Jeanne T. F. D. Vrancken Peeters-Baas, Koen Van de Vijver, Claudette E. Loo, Katarzyna Jóźwiak, Henricus J. C. M. Sterenborg, and Theo J. M. Ruers

Biomed. Opt. Express 7(12), 5188-5200 (2016)  View: HTML | PDF

Smartphone-based multispectral imaging: system development and potential for mobile skin diagnosis

Sewoong Kim, Dongrae Cho, Jihun Kim, Manjae Kim, Sangyeon Youn, Jae Eun Jang, Minkyu Je, Dong Hun Lee, Boreom Lee, Daniel L. Farkas, and Jae Youn Hwang

Biomed. Opt. Express 7(12), 5294-5307 (2016)  View: HTML | PDF

Multi-modal automatic montaging of adaptive optics retinal images

Min Chen, Robert F. Cooper, Grace K. Han, James Gee, David H. Brainard, and Jessica I. W. Morgan

Biomed. Opt. Express 7(12), 4899-4918 (2016)  View: HTML | PDF

Safety assessment in macaques of light exposures for functional two-photon ophthalmoscopy in humans

Christina Schwarz, Robin Sharma, William S. Fischer, Mina Chung, Grazyna Palczewska, Krzysztof Palczewski, David R. Williams, and Jennifer J. Hunter

Biomed. Opt. Express 7(12), 5148-5169 (2016)  View: HTML | PDF

Characterization of transfer function, resolution and depth of field of a soft X-ray microscope applied to tomography enhancement by Wiener deconvolution

Joaquín Otón, Eva Pereiro, Ana J. Pérez-Berná, Laia Millach, Carlos Oscar S. Sorzano, Roberto Marabini, and José M. Carazo

Biomed. Opt. Express 7(12), 5092-5103 (2016)  View: HTML | PDF