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OSA Publishing

1 July 2018, Volume 9, Issue 7, pp. 2887-3480   39 articles

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Terahertz Spectroscopy and Imaging

Quantitative characterization of bovine serum albumin thin-films using terahertz spectroscopy and machine learning methods

Biomed. Opt. Express 9(7), 2917-2929 (2018)  View: HTML | PDF

Pilot study of freshly excised breast tissue response in the 300 – 600 GHz range

Biomed. Opt. Express 9(7), 2930-2942 (2018)  View: HTML | PDF

Diffuse and Fluorescence Tomography

Image reconstruction in fluorescence molecular tomography with sparsity-initialized maximum-likelihood expectation maximization

Biomed. Opt. Express 9(7), 3106-3121 (2018)  View: HTML | PDF

Weighting function effects in a direct regularization method for image-guided near-infrared spectral tomography of breast cancer

Biomed. Opt. Express 9(7), 3266-3283 (2018)  View: HTML | PDF

Image Processing and Image Analysis

Simultaneous arteriole and venule segmentation with domain-specific loss function on a new public database

Biomed. Opt. Express 9(7), 3153-3166 (2018)  View: HTML | PDF

Solving Fourier ptychographic imaging problems via neural network modeling and TensorFlow

Biomed. Opt. Express 9(7), 3306-3319 (2018)  View: HTML | PDF  [Suppl. Mat. (1)]

Microscopy

Super-multiplexed fluorescence microscopy via photostability contrast

Biomed. Opt. Express 9(7), 2943-2954 (2018)  View: HTML | PDF

Millisecond cellular labelling in situ with two-photon photoconversion

Biomed. Opt. Express 9(7), 3067-3077 (2018)  View: HTML | PDF  [Suppl. Mat. (6)]

On-chip light-sheet fluorescence imaging flow cytometry at a high flow speed of 1 m/s

Biomed. Opt. Express 9(7), 3424-3433 (2018)  View: HTML | PDF

Visualization of drug distribution of a topical minocycline gel in human facial skin

Biomed. Opt. Express 9(7), 3434-3448 (2018)  View: HTML | PDF

Real-time visualization of two-photon fluorescence lifetime imaging microscopy using a wavelength-tunable femtosecond pulsed laser

Biomed. Opt. Express 9(7), 3449-3463 (2018)  View: HTML | PDF  [Suppl. Mat. (1)]

Optical Coherence Tomography

Pixel-wise segmentation of severely pathologic retinal pigment epithelium and choroidal stroma using multi-contrast Jones matrix optical coherence tomography

Biomed. Opt. Express 9(7), 2955-2973 (2018)  View: HTML | PDF

Effect of patch size and network architecture on a convolutional neural network approach for automatic segmentation of OCT retinal layers

Biomed. Opt. Express 9(7), 3049-3066 (2018)  View: HTML | PDF

Deep learning for the segmentation of preserved photoreceptors on en face optical coherence tomography in two inherited retinal diseases

Biomed. Opt. Express 9(7), 3092-3105 (2018)  View: HTML | PDF

Realistic simulation and experiment reveals the importance of scatterer microstructure in optical coherence tomography image formation

Biomed. Opt. Express 9(7), 3122-3136 (2018)  View: HTML | PDF

Editors' Pick

Volumetric optical coherence microscopy with a high space-bandwidth-time product enabled by hybrid adaptive optics

Biomed. Opt. Express 9(7), 3137-3152 (2018)  View: HTML | PDF  [Suppl. Mat. (2)]

Automatic quantification of choroidal neovascularization lesion area on OCT angiography based on density cell-like P systems with active membranes

Biomed. Opt. Express 9(7), 3208-3219 (2018)  View: HTML | PDF

Machine-learning based segmentation of the optic nerve head using multi-contrast Jones matrix optical coherence tomography with semi-automatic training dataset generation

Biomed. Opt. Express 9(7), 3220-3243 (2018)  View: HTML | PDF

DRUNET: a dilated-residual U-Net deep learning network to segment optic nerve head tissues in optical coherence tomography images

Biomed. Opt. Express 9(7), 3244-3265 (2018)  View: HTML | PDF

Temporally and spatially adaptive Doppler analysis for robust handheld optical coherence elastography

Biomed. Opt. Express 9(7), 3335-3353 (2018)  View: HTML | PDF  [Suppl. Mat. (3)]

Editors' Pick

Volumetric non-local-means based speckle reduction for optical coherence tomography

Biomed. Opt. Express 9(7), 3354-3372 (2018)  View: HTML | PDF  [Suppl. Mat. (4)]

Fiber-based visible and near infrared optical coherence tomography (vnOCT) enables quantitative elastic light scattering spectroscopy in human retina

Biomed. Opt. Express 9(7), 3464-3480 (2018)  View: HTML | PDF  [Suppl. Mat. (2)]

Optical Diagnostics

Optical Therapies

Effect of spatial light distribution on the thermal response of vascular tissue

Biomed. Opt. Express 9(7), 3037-3048 (2018)  View: HTML | PDF

Photoacoustic Imaging and Spectroscopy

Segmentation of vessel structures from photoacoustic images with reliability assessment

Biomed. Opt. Express 9(7), 2887-2904 (2018)  View: HTML | PDF  [Suppl. Mat. (2)]

Tissue Optics and Spectroscopy

Quantitative diagnosis of tissue microstructure with wide-field high spatial frequency domain imaging

Biomed. Opt. Express 9(7), 2905-2916 (2018)  View: HTML | PDF

Multiwavelength time-resolved near-infrared spectroscopy of the adult head: assessment of intracerebral and extracerebral absorption changes

Biomed. Opt. Express 9(7), 2974-2993 (2018)  View: HTML | PDF

Comparison of source localization techniques in diffuse optical tomography for fNIRS application using a realistic head model

Biomed. Opt. Express 9(7), 2994-3016 (2018)  View: HTML | PDF

Decoding cortical brain states from widefield calcium imaging data using visibility graph

Biomed. Opt. Express 9(7), 3017-3036 (2018)  View: HTML | PDF  [Suppl. Mat. (2)]

Fundus autofluorescence beyond lipofuscin: lesson learned from ex vivo fluorescence lifetime imaging in porcine eyes

Biomed. Opt. Express 9(7), 3078-3091 (2018)  View: HTML | PDF

Prenatal detection of thalassemia by cell-free fetal DNA (cffDNA) in maternal plasma using surface enhanced Raman spectroscopy combined with PCR

Biomed. Opt. Express 9(7), 3167-3176 (2018)  View: HTML | PDF

Prediction of the anti-glioma therapeutic effects of temozolomide through in vivo molecular imaging of MMP expression

Biomed. Opt. Express 9(7), 3193-3207 (2018)  View: HTML | PDF

New fluorescent compounds produced by femtosecond laser surgery in biological tissues: the mechanisms

Biomed. Opt. Express 9(7), 3373-3390 (2018)  View: HTML | PDF

Real-time localization of the parathyroid gland in surgical field using Raspberry Pi during thyroidectomy: a preliminary report

Biomed. Opt. Express 9(7), 3391-3398 (2018)  View: HTML | PDF

Near-simultaneous quantification of glucose uptake, mitochondrial membrane potential, and vascular parameters in murine flank tumors using quantitative diffuse reflectance and fluorescence spectroscopy

Biomed. Opt. Express 9(7), 3399-3412 (2018)  View: HTML | PDF

Assessment of the radiotherapy effect for nasopharyngeal cancer using plasma surface-enhanced Raman spectroscopy technology

Biomed. Opt. Express 9(7), 3413-3423 (2018)  View: HTML | PDF

Vision and Visual Optics

Glare-free retinal imaging using a portable light field fundus camera

Biomed. Opt. Express 9(7), 3178-3192 (2018)  View: HTML | PDF

Selective retina therapy enhanced with optical coherence tomography for dosimetry control and monitoring: a proof of concept study

Biomed. Opt. Express 9(7), 3320-3334 (2018)  View: HTML | PDF

Microscopy

Visualization of laser tattoo removal treatment effects in a mouse model by two-photon microscopy: erratum

Biomed. Opt. Express 9(7), 3177-3177 (2018)  View: HTML | PDF

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