Introduction to the Feature Issue on Adaptive Optics for Biomedical Applications

Ramkumar Sabesan, Kate Grieve, Daniel X. Hammer, Na Ji, and Susana Marcos

Biomed. Opt. Express 14(4), 1772-1776 (2023)  View: HTML | PDF

Adaptive optics for optical microscopy [Invited]

Qinrong Zhang, Qi Hu, Caroline Berlage, Peter Kner, Benjamin Judkewitz, Martin Booth, and Na Ji

Biomed. Opt. Express 14(4), 1732-1756 (2023)  View: HTML | PDF

Photoacoustic imaging with limited sampling: a review of machine learning approaches

Ruofan Wang, Jing Zhu, Jun Xia, Junjie Yao, Junhui Shi, and Chiye Li

Biomed. Opt. Express 14(4), 1777-1799 (2023)  View: HTML | PDF

Compact breast shape acquisition system for improving diffuse optical tomography image reconstructions

Morris Vanegas, Miguel Mireles, Edward Xu, Shijie Yan, and Qianqian Fang

Biomed. Opt. Express 14(4), 1579-1593 (2023)  View: HTML | PDF

Fusion deep learning approach combining diffuse optical tomography and ultrasound for improving breast cancer classification

Menghao Zhang, Minghao Xue, Shuying Li, Yun Zou, and Quing Zhu

Biomed. Opt. Express 14(4), 1636-1646 (2023)  View: HTML | PDF

Random matrix-based laser speckle contrast imaging enables quasi-3D blood flow imaging in laparoscopic surgery

Yong Guo, Yuanchi Weng, Yifan Zhang, Shanbao Tong, Yan Liu, Zheng Lu, and Peng Miao

Biomed. Opt. Express 14(4), 1480-1493 (2023)  View: HTML | PDF

Weakly supervised identification of microscopic human breast cancer-related optical signatures from normal-appearing breast tissue

Jindou Shi, Haohua Tu, Jaena Park, Marina Marjanovic, Anna M. Higham, Natasha N. Luckey, Kimberly A. Cradock, Z. George Liu, and Stephen A. Boppart

Biomed. Opt. Express 14(4), 1339-1354 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

PCCA-Model: an attention module for medical image segmentation

Linjie Liu, Guanglei Wang, Yanlin Wu, Hongrui Wang, and Yan Li

Biomed. Opt. Express 14(4), 1428-1444 (2023)  View: HTML | PDF

Compact, high-speed multi-directional selective plane illumination microscopy

Rory M. Power, Anjalie Schlaeppi, and Jan Huisken

Biomed. Opt. Express 14(4), 1445-1459 (2023)  View: HTML | PDF  [Suppl. Mat. (2)]

Optofluidic adaptive optics in multi-photon microscopy

Maximilian Sohmen, Juan D. Muñoz-Bolaños, Pouya Rajaeipour, Monika Ritsch-Marte, Çağlar Ataman, and Alexander Jesacher

Biomed. Opt. Express 14(4), 1562-1578 (2023)  View: HTML | PDF

Simultaneous dual-modal photoacoustic and harmonic ultrasound microscopy with an optimized acoustic combiner

Jingyi Zhu, Jiangbo Chen, Mohammadreza Amjadian, Siyi Liang, Zheng Qu, Yue Wang, Yachao Zhang, and Lidai Wang

Biomed. Opt. Express 14(4), 1626-1635 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

In vivo longitudinal 920 nm two-photon intravital kidney imaging of a dynamic 2,8-DHA crystal formation and tubular deterioration in the adenine-induced chronic kidney disease mouse model

Jieun Choi, Min-Sun Choi, Jehwi Jeon, Jieun Moon, Jingu Lee, Eunji Kong, Stephani Edwina Lucia, Sujung Hong, Ji-Hye Lee, Eun Young Lee, and Pilhan Kim

Biomed. Opt. Express 14(4), 1647-1658 (2023)  View: HTML | PDF

Large-scale high-throughput 3D culture, imaging, and analysis of cell spheroids using microchip-enhanced light-sheet microscopy

Tingting Zhu, Jun Nie, Tingting Yu, Dan Zhu, Yanyi Huang, Zaozao Chen, Zhongze Gu, Jiang Tang, Dongyu Li, and Peng Fei

Biomed. Opt. Express 14(4), 1659-1669 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Fluorescence lifetime tracking and imaging of single moving particles assisted by a low-photon-count analysis algorithm

Pengfa Chen, Qin Kang, JingJing Niu, YingYing Jing, Xiao Zhang, Bin Yu, Junle Qu, and Danying Lin

Biomed. Opt. Express 14(4), 1718-1731 (2023)  View: HTML | PDF  [Suppl. Mat. (2)]

Deep learning using a residual deconvolutional network enables real-time high-density single-molecule localization microscopy

Zhiwei Zhou, Junnan Wu, Zhengxia Wang, and Zhen-Li Huang

Biomed. Opt. Express 14(4), 1833-1847 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Lossless temporal contrast analysis of laser speckle images from periodic signals

Alberto González Olmos, Zaka Humlesen, Vladimir Matchkov, and Dmitry D. Postnov

Biomed. Opt. Express 14(4), 1355-1363 (2023)  View: HTML | PDF

Microfluidic immunosensor based on a graphene oxide functionalized double helix microfiber coupler for anti-Müllerian hormone detection

Yujie Li, Binbin Luo, Yanan Liu, Sehngxi Wu, Shenghui Shi, Huiji Chen, and Mingfu Zhao

Biomed. Opt. Express 14(4), 1364-1377 (2023)  View: HTML | PDF

Hybrid silicon-tellurium-dioxide DBR resonators coated in PMMA for biological sensing

Dawson B. Bonneville, Mitchell Albert, Ramis Arbi, Muhammad Munir, Bruno L. Segat Frare, Khadijeh Miarabbas Kiani, Henry C. Frankis, Andrew P. Knights, Ayse Turak, Kyla N. Sask, and Jonathan D. B. Bradley

Biomed. Opt. Express 14(4), 1545-1561 (2023)  View: HTML | PDF

Automatic measurement of anterior chamber angle parameters in AS-OCT images using deep learning

Guangqian Yang, Kaiwen Li, Jinhan Yao, Shuimiao Chang, Chong He, Fang Lu, Xiaogang Wang, and Zhao Wang

Biomed. Opt. Express 14(4), 1378-1392 (2023)  View: HTML | PDF

Nanosensitive optical coherence tomography for detecting structural changes in stem cells

Anand Arangath, Niamh Duffy, Sergey Alexandrov, Soorya James, Kai Neuhaus, Mary Murphy, and Martin Leahy

Biomed. Opt. Express 14(4), 1411-1427 (2023)  View: HTML | PDF

Investigating the correlation between early vascular alterations and cognitive impairment in Alzheimer’s disease in mice with SD-OCT

Jang-Hoon Lee, Sabina Stefan, Konrad Walek, Jiarui Nie, Kyounghee Min, Taeseok Daniel Yang, and Jonghwan Lee

Biomed. Opt. Express 14(4), 1494-1508 (2023)  View: HTML | PDF

Synthesizing the degree of polarization uniformity from non-polarization-sensitive optical coherence tomography signals using a neural network

Shuichi Makita, Masahiro Miura, Shinnosuke Azuma, Toshihiro Mino, and Yoshiaki Yasuno

Biomed. Opt. Express 14(4), 1522-1543 (2023)  View: HTML | PDF

Functional OCT angiography reveals early retinal neurovascular dysfunction in diabetes with capillary resolution

Kaiyuan Liu, Tiepei Zhu, Mengqin Gao, Xiaoting Yin, Rong Zheng, Yan Yan, Lei Gao, Zhihua Ding, Juan Ye, and Peng Li

Biomed. Opt. Express 14(4), 1670-1684 (2023)  View: HTML | PDF  [Suppl. Mat. (2)]

Quantifying the drug response of patient-derived organoid clusters by aggregated morphological indicators with multi-parameters based on optical coherence tomography

Linyi Zhang, Ling Wang, Shanshan Yang, Kangxin He, Di Bao, and Mingen Xu

Biomed. Opt. Express 14(4), 1703-1717 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Photobiomodulation for knee osteoarthritis: a model-based dosimetry study

Zefeng Feng, Peipei Wang, Yang Song, Haiyang Wang, Zhiliang Jin, and Daxi Xiong

Biomed. Opt. Express 14(4), 1800-1817 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Glucose diagnosis system combining machine learning and NIR photoacoustic multispectral using a low power CW laser

Lifeng Yang, Zhaojiang Zhang, Xin Wei, and Yan Yang

Biomed. Opt. Express 14(4), 1685-1702 (2023)  View: HTML | PDF

Temperature dependence of the dielectric function of dehydrated biological samples in the THz band

Jan Helminiak, Mariana Alfaro-Gomez, Goretti G. Hernandez-Cardoso, Martin Koch, and Enrique Castro-Camus

Biomed. Opt. Express 14(4), 1472-1479 (2023)  View: HTML | PDF  [Suppl. Mat. (3)]

3D stimulated Raman spectral imaging of water dynamics associated with pectin-glycocalyceal entanglement

Moritz Floess, Tobias Steinle, Florian Werner, Yunshan Wang, Willi L. Wagner, Verena Steinle, Betty S. Liu, Yifan Zheng, Zi Chen, Maximilian Ackermann, Steven J. Mentzer, and Harald Giessen

Biomed. Opt. Express 14(4), 1460-1471 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Diffuse reflectance spectroscopy of the cartilage tissue in the fourth optical window

Dmitriy A. Nazarov, Georgy M. Denisenko, Gleb S. Budylin, Elizaveta A. Kozlova, Marina M. Lipina, Vladimir A. Lazarev, Evgeny A. Shirshin, and Mikhail K. Tarabrin

Biomed. Opt. Express 14(4), 1509-1521 (2023)  View: HTML | PDF

Simultaneous photoplethysmography and blood flow measurements towards the estimation of blood pressure using speckle contrast optical spectroscopy

Ariane Garrett, Byungchan Kim, Edbert J. Sie, Nil Z. Gurel, Francesco Marsili, David A. Boas, and Darren Roblyer

Biomed. Opt. Express 14(4), 1594-1607 (2023)  View: HTML | PDF

Real-time and accurate estimation ex vivo of four basic optical properties from thin tissue based on a cascade forward neural network

Haitao Chen, Kaixian Liu, Yuxuan Jiang, Yafeng Liu, and Yong Deng

Biomed. Opt. Express 14(4), 1818-1832 (2023)  View: HTML | PDF

Adaptive optics fluorescence lifetime imaging ophthalmoscopy of in vivo human retinal pigment epithelium: erratum

Janet A. H. Tang, Charles E. Granger, Karteek Kunala, Keith Parkins, Khang T. Huynh, Kristen Bowles-Johnson, Qiang Yang, and Jennifer J. Hunter

Biomed. Opt. Express 14(4), 1544-1544 (2023)  View: HTML | PDF