Label-free, non-invasive, and repeatable cell viability bioassay using dynamic full-field optical coherence microscopy and supervised machine learning

Soongho Park, Vinay Veluvolu, William S. Martin, Thien Nguyen, Jinho Park, Dan L. Sackett, Claude Boccara, and Amir Gandjbakhche

Biomed. Opt. Express 13(6), 3187-3194 (2022)  View: HTML | PDF

Reflective fiber-optic sensor for on-line nondestructive monitoring of Aspergillus on the surface of cultural paper relics

Qiuhui Yu, Zhengda Xue, Rong Hu, Nianbing Zhong, Tan Zeng, Huan Tang, Ya Zhao, and Mingfu Zhao

Biomed. Opt. Express 13(6), 3324-3338 (2022)  View: HTML | PDF

Prototype endoscopic photoacoustic-ultrasound balloon catheter for characterizing intestinal obstruction

Yunhao Zhu, Linyu Ni, Guorong Hu, Laura A. Johnson, Kathryn A. Eaton, Xueding Wang, Peter D. R. Higgins, and Guan Xu

Biomed. Opt. Express 13(6), 3355-3365 (2022)  View: HTML | PDF

High-throughput multi-resolution foveated laparoscope for minimally invasive surgery

Jeremy I. Katz and Hong Hua

Biomed. Opt. Express 13(6), 3366-3379 (2022)  View: HTML | PDF

Retinal layer segmentation in optical coherence tomography (OCT) using a 3D deep-convolutional regression network for patients with age-related macular degeneration

Souvick Mukherjee, Tharindu De Silva, Peyton Grisso, Henry Wiley, D. L. Keenan Tiarnan, Alisa T Thavikulwat, Emily Chew, and Catherine Cukras

Biomed. Opt. Express 13(6), 3195-3210 (2022)  View: HTML | PDF

Multi-class classification of breast tissue using optical coherence tomography and attenuation imaging combined via deep learning

Ken Y. Foo, Kyle Newman, Qi Fang, Peijun Gong, Hina M. Ismail, Devina D. Lakhiani, Renate Zilkens, Benjamin F. Dessauvagie, Bruce Latham, Christobel M. Saunders, Lixin Chin, and Brendan F. Kennedy

Biomed. Opt. Express 13(6), 3380-3400 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

FCE-Net: a fast image contrast enhancement method based on deep learning for biomedical optical images

Yunfei Zhang, Peng Wu, Siqi Chen, Hui Gong, and Xiaoquan Yang

Biomed. Opt. Express 13(6), 3521-3534 (2022)  View: HTML | PDF

Deep learning for denoising in a Mueller matrix microscope

Xiongjie Yang, Qianhao Zhao, Tongyu Huang, Zheng Hu, Tongjun Bu, Honghui He, Anli Hou, Migao Li, Yucheng Xiao, and Hui Ma

Biomed. Opt. Express 13(6), 3535-3551 (2022)  View: HTML | PDF

Multi-perspective label based deep learning framework for cerebral vasculature segmentation in whole-brain fluorescence images

Yuxin Li, Tong Ren, Junhuai Li, Xiangning Li, and Anan Li

Biomed. Opt. Express 13(6), 3657-3671 (2022)  View: HTML | PDF  [Suppl. Mat. (6)]

Bessel-beam illumination Raman microscopy

Kazuki Bando, Shumpei Yabuuchi, Menglu Li, Toshiki Kubo, Ryosuke Oketani, Nicholas I. Smith, and Katsumasa Fujita

Biomed. Opt. Express 13(6), 3161-3170 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

PCIe-based FPGA-GPU heterogeneous computation for real-time multi-emitter fitting in super-resolution localization microscopy

Dan Gui, Yunjiu Chen, Weibing Kuang, Mingtao Shang, Yingjun Zhang, and Zhen-Li Huang

Biomed. Opt. Express 13(6), 3401-3415 (2022)  View: HTML | PDF

High-speed 3D imaging flow cytometry with optofluidic spatial transformation

Masashi Ugawa and Sadao Ota

Biomed. Opt. Express 13(6), 3647-3656 (2022)  View: HTML | PDF  [Suppl. Mat. (8)]

MRI/fluorescence dual-mode probe: its simple preparation method and imaging application in vitro

Qiang Zhang, Zhifang Wu, Jianqiao Song, Boye Zhang, Qianqian Duan, Darui Song, Linjun Hu, Sijin Li, and Shengbo Sang

Biomed. Opt. Express 13(6), 3493-3502 (2022)  View: HTML | PDF

Second harmonic generation microscopy of otoconia

Kennedy Brittain, MacAulay Harvey, Richard Cisek, Saranyan Pillai, Sean D Christie, and Danielle Tokarz

Biomed. Opt. Express 13(6), 3593-3600 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Label-free plasmonic immunosensor for cortisol detection in a D-shaped optical fiber

Maria S. Soares, Luís C. B. Silva, Miguel Vidal, Médéric Loyez, Margarida Facão, Christophe Caucheteur, Marcelo E. V. Segatto, Florinda M. Costa, Cátia Leitão, Sónia O. Pereira, Nuno F. Santos, and Carlos A. F. Marques

Biomed. Opt. Express 13(6), 3259-3274 (2022)  View: HTML | PDF

Stress management using fNIRS and binaural beats stimulation

Fares Al-Shargie, Rateb Katmah, Usman Tariq, Fabio Babiloni, Fadwa Al-Mughairbi, and Hasan Al-Nashash

Biomed. Opt. Express 13(6), 3552-3575 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Portable boom-type ultrahigh-resolution OCT with an integrated imaging probe for supine position retinal imaging

Zhengyu Duan, Kai Huang, Zhongzhou Luo, Ke Ma, Gengyuan Wang, Xiaodong Hu, Jinze Zhang, Xiaoling Luo, Yuancong Huang, Gangjun Liu, Xiaoyan Ding, Peng Xiao, and Jin Yuan

Biomed. Opt. Express 13(6), 3295-3310 (2022)  View: HTML | PDF

Three-dimensional opto-thermo-mechanical model for predicting photo-thermal optical coherence tomography responses in multilayer geometries

Mohammad Hossein Salimi, Martin Villiger, and Nima Tabatabaei

Biomed. Opt. Express 13(6), 3416-3433 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Automated classification of otitis media with OCT: augmenting pediatric image datasets with gold-standard animal model data

Guillermo L. Monroy, Jungeun Won, Jindou Shi, Malcolm C. Hill, Ryan G. Porter, Michael A. Novak, Wenzhou Hong, Pawjai Khampang, Joseph E. Kerschner, Darold R. Spillman, and Stephen A. Boppart

Biomed. Opt. Express 13(6), 3601-3614 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Dynamic inverse SNR-decorrelation OCT angiography with GPU acceleration

Xiaofeng Deng, Kaiyuan Liu, Tiepei Zhu, Dayou Guo, Xiaoting Yin, Lin Yao, Zhihua Ding, Juan Ye, and Peng Li

Biomed. Opt. Express 13(6), 3615-3628 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Intraoral optical coherence tomography and angiography combined with autofluorescence for dental assessment

Nhan Le, Jie Lu, Peijun Tang, Kwok-Hung Chung, Hrebesh Subhash, LaTonya Kilpatrick-Liverman, and Ruikang K. Wang

Biomed. Opt. Express 13(6), 3629-3646 (2022)  View: HTML | PDF

Dynamic volumetric imaging and cilia beat mapping in the mouse male reproductive tract with optical coherence tomography

Kohei Umezu, Tian Xia, and Irina V. Larina

Biomed. Opt. Express 13(6), 3672-3684 (2022)  View: HTML | PDF  [Suppl. Mat. (8)]

Spatial and temporal patterns in dynamic-contrast enhanced intraoperative fluorescence imaging enable classification of bone perfusion in patients undergoing leg amputation

Xinyue Han, Valentin Demidov, Vikrant S. Vaze, Shudong Jiang, Ida Leah Gitajn, and Jonathan T. Elliott

Biomed. Opt. Express 13(6), 3171-3186 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Optical clearing imaging assisted evaluation of urokinase thrombolytic therapy on cerebral vessels with different sizes

Dongyu Li, Lu Deng, Zhengwu Hu, Yusha Li, Tingting Yu, Xiang Zhong, Jingtan Zhu, and Dan Zhu

Biomed. Opt. Express 13(6), 3243-3258 (2022)  View: HTML | PDF

Clot composition characterization using diffuse reflectance spectroscopy in acute ischemic stroke

Simon Skyrman, Gustav Burström, Oskar Aspegren, Drazenko Babic, Gerald Lucassen, Erik Edström, Fabian Arnberg, Marcus Ohlsson, Manfred Mueller, Adrian Elmi-Terander, and Tommy Andersson

Biomed. Opt. Express 13(6), 3311-3323 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Polarization-based probabilistic discriminative model for quantitative characterization of cancer cells

Jiachen Wan, Yang Dong, Jing-Hao Xue, Liyan Lin, Shan Du, Jia Dong, Yue Yao, Chao Li, and Hui Ma

Biomed. Opt. Express 13(6), 3339-3354 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Analysis on the difference of skin surface lipids during blue light therapy for acne by lipidomics

Wenyu Ding, Yiqiong Hu, Xiaoqian Yu, Congfen He, and Yan Tian

Biomed. Opt. Express 13(6), 3434-3445 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Wavelength and frequency optimization in spatial frequency domain imaging for two-layer tissue

Yikun Wang, Xu Kang, Yang Zhang, Zhiguo Shi, Huiming Ren, Quanfu Wang, Mingwei Chen, and Yuanzhi Zhang

Biomed. Opt. Express 13(6), 3224-3242 (2022)  View: HTML | PDF

Hyperspectral evaluation of vasculature in induced peritonitis mouse models

Jošt Stergar, Katja Lakota, Martina Perše, Matija Tomšič, and Matija Milanič

Biomed. Opt. Express 13(6), 3461-3475 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Reflectance evaluation of eye fundus structures with a visible and near-infrared multispectral camera

Francisco J. Burgos-Fernández, Tommaso Alterini, Fernando Díaz-Doutón, Laura González, Carlos Mateo, Clara Mestre, Jaume Pujol, and Meritxell Vilaseca

Biomed. Opt. Express 13(6), 3504-3519 (2022)  View: HTML | PDF

Non-interferometric volumetric imaging in living human retina by confocal oblique scanning laser ophthalmoscopy

Wenjun Shao and Ji Yi

Biomed. Opt. Express 13(6), 3576-3592 (2022)  View: HTML | PDF  [Suppl. Mat. (5)]

Spectroscopic thermo-elastic optical coherence tomography for tissue characterization: publisher’s note

Aaron Doug Deen, Heleen M. M. Van Beusekom, Tom Pfeiffer, Mathijs Stam, Dominique De Kleijn, Jolanda Wentzel, Robert Huber, Antonius F. W. Van Der Steen, Gijs Van Soest, and Tianshi Wang

Biomed. Opt. Express 13(6), 3503-3503 (2022)  View: HTML | PDF

Computational refocusing of Jones matrix polarization-sensitive optical coherence tomography and investigation of defocus-induced polarization artifacts: publisher’s note

Lida Zhu, Shuichi Makita, Daisuke Oida, Arata Miyazawa, Kensuke Oikawa, Pradipta Mukherjee, Antonia Lichtenegger, Martin Distel, and Yoshiaki Yasuno

Biomed. Opt. Express 13(6), 3520-3520 (2022)  View: HTML | PDF