Analysis of polarized diffraction images of human red blood cells: a numerical study

Wenjin Wang, Li Min, Peng Tian, Chao Wu, Jing Liu, and Xin-Hua Hu

Biomed. Opt. Express 13(3), 1161-1172 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Bioluminescence tomography reconstruction in conjunction with an organ probability map as an anatomical reference

Wanzhou Yin, Xiang Li, Qian Cao, Hongkai Wang, and Bin Zhang

Biomed. Opt. Express 13(3), 1275-1291 (2022)  View: HTML | PDF

Adaptive brightness fusion method for intraoperative near-infrared fluorescence and visible images

Chong Zhang, Kun Wang, and Jie Tian

Biomed. Opt. Express 13(3), 1243-1260 (2022)  View: HTML | PDF

Elimination of stripe artifacts in light sheet fluorescence microscopy using an attention-based residual neural network

Zechen Wei, Xiangjun Wu, Wei Tong, Suhui Zhang, Xin Yang, Jie Tian, and Hui Hui

Biomed. Opt. Express 13(3), 1292-1311 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Automatic geographic atrophy segmentation using optical attenuation in OCT scans with deep learning

Zhongdi Chu, Liang Wang, Xiao Zhou, Yingying Shi, Yuxuan Cheng, Rita Laiginhas, Hao Zhou, Mengxi Shen, Qinqin Zhang, Luis de Sisternes, Aaron Y. Lee, Giovanni Gregori, Philip J. Rosenfeld, and Ruikang K. Wang

Biomed. Opt. Express 13(3), 1328-1343 (2022)  View: HTML | PDF

Real-time OCT image denoising using a self-fusion neural network

Jose J. Rico-Jimenez, Dewei Hu, Eric M. Tang, Ipek Oguz, and Yuankai K. Tao

Biomed. Opt. Express 13(3), 1398-1409 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

Automated instrument-tracking for 4D video-rate imaging of ophthalmic surgical maneuvers

Eric M. Tang, Mohamed T. El-Haddad, Shriji N. Patel, and Yuankai K. Tao

Biomed. Opt. Express 13(3), 1471-1484 (2022)  View: HTML | PDF  [Suppl. Mat. (3)]

Melanin concentration maps by label-free super-resolution photo-thermal imaging on melanoma biopsies

Margaux Bouzin, Mario Marini, Giuseppe Chirico, Francesca Granucci, Francesca Mingozzi, Roberto Colombo, Laura D’Alfonso, Laura Sironi, and Maddalena Collini

Biomed. Opt. Express 13(3), 1173-1187 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Cellular analysis using label-free parallel array microscopy with Fourier ptychography

Devin L. Wakefield, Richard Graham, Kevin Wong, Songli Wang, Christopher Hale, and Chung-Chieh Yu

Biomed. Opt. Express 13(3), 1312-1327 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Commercially derived versatile optical architecture for two-photon STED, wavelength mixing and label-free microscopy

Chiara Peres, Chiara Nardin, Guang Yang, and Fabio Mammano

Biomed. Opt. Express 13(3), 1410-1429 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

Handheld laser scanning microscope catheter for real-time and in vivo confocal microscopy using a high definition high frame rate Lissajous MEMS mirror

Jaehun Jeon, Hyunwoo Kim, Hyunwoo Jang, Kyungmin Hwang, Kyuyoung Kim, Young-Gyun Park, and Ki-Hun Jeong

Biomed. Opt. Express 13(3), 1497-1505 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy

Giuseppe de Vito, Lapo Turrini, Caroline Müllenbroich, Pietro Ricci, Giuseppe Sancataldo, Giacomo Mazzamuto, Natascia Tiso, Leonardo Sacconi, Duccio Fanelli, Ludovico Silvestri, Francesco Vanzi, and Francesco Saverio Pavone

Biomed. Opt. Express 13(3), 1516-1536 (2022)  View: HTML | PDF  [Suppl. Mat. (3)]

Robust Fourier ptychographic microscopy via a physics-based defocusing strategy for calibrating angle-varied LED illumination

Chuanjian Zheng, Shaohui Zhang, Guocheng Zhou, Yao Hu, and Qun Hao

Biomed. Opt. Express 13(3), 1581-1594 (2022)  View: HTML | PDF

Self-calibrated 3D differential phase contrast microscopy with optimized illumination

Ruiming Cao, Michael Kellman, David Ren, Regina Eckert, and Laura Waller

Biomed. Opt. Express 13(3), 1671-1684 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Imaging of vitreous cortex hyalocyte dynamics using non-confocal quadrant-detection adaptive optics scanning light ophthalmoscopy in human subjects

Justin V. Migacz, Oscar Otero-Marquez, Rebecca Zhou, Kara Rickford, Brian Murillo, Davis B. Zhou, Maria V. Castanos, Nripun Sredar, Alfredo Dubra, Richard B. Rosen, and Toco Y. P. Chui

Biomed. Opt. Express 13(3), 1755-1773 (2022)  View: HTML | PDF  [Suppl. Mat. (13)]

Esophageal optical coherence tomography image synthesis using an adversarially learned variational autoencoder

Meng Gan and Cong Wang

Biomed. Opt. Express 13(3), 1188-1201 (2022)  View: HTML | PDF

In vivo PS-OCT needle probe scan of human skeletal muscle

Jeffrey M. McBride, Michael J. Hackmann, Sophia Nimphius, and Barry Cense

Biomed. Opt. Express 13(3), 1386-1397 (2022)  View: HTML | PDF

Spectroscopic thermo-elastic optical coherence tomography for tissue characterization

Aaron Doug Deen, Heleen M. M. Van Beusekom, Tom Pfeiffer, Mathijs Stam, Dominique De Kleijn, Jolanda Wentzel, Robert Huber, Antonius F. W. Van Der Steen, Gijs Van Soest, and Tianshi Wang

Biomed. Opt. Express 13(3), 1430-1446 (2022)  View: HTML | PDF

Imaging and characterization of transitions in biofilm morphology via anomalous diffusion following environmental perturbation

Honggu Choi, Farzana R. Zaki, Guillermo L. Monroy, Jungeun Won, and Stephen A. Boppart

Biomed. Opt. Express 13(3), 1654-1670 (2022)  View: HTML | PDF

Numerical calibration method for a multiple spectrometer-based OCT system

Yusi Miao, Jun Song, Destiny Hsu, Ringo Ng, Yifan Jian, Marinko V. Sarunic, and Myeong Jin Ju

Biomed. Opt. Express 13(3), 1685-1701 (2022)  View: HTML | PDF

Quantitative measurement of optical properties and Hb concentration in a rodent model of inflammatory Meibomian gland dysfunction using spatial frequency domain imaging

Hyeongbeom Kim, Kyong Jin Cho, Anthony J. Durkin, Bruce J. Tromberg, and Ilyong Park

Biomed. Opt. Express 13(3), 1261-1274 (2022)  View: HTML | PDF

Characteristics of frontal activity relevant to cognitive function in bipolar depression: an fNIRS study

Chenyang Gao, Hetong Zhou, Jingjing Liu, Jia Xiu, Qi Huang, Yin Liang, Ting Li, and Shaohua Hu

Biomed. Opt. Express 13(3), 1551-1563 (2022)  View: HTML | PDF

Polarization imaging-based radiomics approach for the staging of liver fibrosis

Yue Yao, Fengdi Zhang, Bin Wang, Jiachen Wan, Lu Si, Yang Dong, Yuanhuan Zhu, Xiaolong Liu, Lihong Chen, and Hui Ma

Biomed. Opt. Express 13(3), 1564-1580 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Multiphysical numerical study of photothermal therapy of glioblastoma with photoacoustic temperature monitoring in a mouse head

Antoine Capart, Khaled Metwally, Chiara Bastiancich, and Anabela Da Silva

Biomed. Opt. Express 13(3), 1202-1223 (2022)  View: HTML | PDF

Femtosecond laser oocyte enucleation as a low-invasive and effective method of recipient cytoplast preparation

Alina A. Osychenko, Alexandr D. Zalessky, Uliana A. Tochilo, David Yu. Martirosyan, Yulia Yu. Silaeva, and Victor A. Nadtochenko

Biomed. Opt. Express 13(3), 1447-1456 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Label-free enzymatic reaction monitoring in water-in-oil microdroplets using ultra-broadband multiplex coherent anti-Stokes Raman scattering spectroscopy

Ryo Imai and Hideaki Kano

Biomed. Opt. Express 13(3), 1506-1515 (2022)  View: HTML | PDF

Tissue-mimicking phantoms for performance evaluation of photoacoustic microscopy systems

Hsun-Chia Hsu, Keith A. Wear, T. Joshua Pfefer, and William C. Vogt

Biomed. Opt. Express 13(3), 1357-1373 (2022)  View: HTML | PDF

Visualization of blood-brain barrier disruption with dual-wavelength high-resolution photoacoustic microscopy

Yongchao Wang, Ruoxi Zhang, Qian Chen, Heng Guo, Xiao Liang, Tingting Li, Weizhi Qi, and Lei Xi

Biomed. Opt. Express 13(3), 1537-1550 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Accuracy of peak-power compensation in fiber-guided and free-space acoustic-resolution photoacoustic microscopy

Amir Asadollahi, Hamid Latifi, Shahriar Zeynali, Manojit Pramanik, and Hamed Qazvini

Biomed. Opt. Express 13(3), 1774-1783 (2022)  View: HTML | PDF

Complete head cerebral sensitivity mapping for diffuse correlation spectroscopy using subject-specific magnetic resonance imaging models

Melissa M. Wu, Katherine Perdue, Suk-Tak Chan, Kimberly A. Stephens, Bin Deng, Maria Angela Franceschini, and Stefan A. Carp

Biomed. Opt. Express 13(3), 1131-1151 (2022)  View: HTML | PDF

Band selection for oxygenation estimation with multispectral/hyperspectral imaging

Leonardo Ayala, Fabian Isensee, Sebastian J. Wirkert, Anant S. Vemuri, Klaus H. Maier-Hein, Baowei Fei, and Lena Maier-Hein

Biomed. Opt. Express 13(3), 1224-1242 (2022)  View: HTML | PDF

First-in-clinical application of a time-gated diffuse correlation spectroscopy system at 1064 nm using superconducting nanowire single photon detectors in a neuro intensive care unit

Chien-Sing Poon, Dharminder S. Langri, Benjamin Rinehart, Timothy M. Rambo, Aaron J. Miller, Brandon Foreman, and Ulas Sunar

Biomed. Opt. Express 13(3), 1344-1356 (2022)  View: HTML | PDF

Reconstruction of optical coefficients in turbid media using time-resolved reflectance and calibration-free instrument response functions

Michael Helton, Mary-Ann Mycek, and Karthik Vishwanath

Biomed. Opt. Express 13(3), 1595-1608 (2022)  View: HTML | PDF

Adaptive optics fluorescence lifetime imaging ophthalmoscopy of in vivo human retinal pigment epithelium

Janet A. H. Tang, Charles E. Granger, Karteek Kunala, Keith Parkins, Khang T. Huynh, Kristen Bowles-Johnson, Qiang Yang, and Jennifer J. Hunter

Biomed. Opt. Express 13(3), 1737-1754 (2022)  View: HTML | PDF  [Suppl. Mat. (5)]

Brain virtual histology with X-ray phase-contrast tomography Part I: whole-brain myelin mapping in white-matter injury models

Matthieu Chourrout, Hugo Rositi, Elodie Ong, Violaine Hubert, Alexandre Paccalet, Louis Foucault, Awen Autret, Barbara Fayard, Cécile Olivier, Radu Bolbos, Françoise Peyrin, Claire Crola-da-Silva, David Meyronet, Olivier Raineteau, Héléne Elleaume, Emmanuel Brun, Fabien Chauveau, and Marlene Wiart

Biomed. Opt. Express 13(3), 1620-1639 (2022)  View: HTML | PDF  [Suppl. Mat. (3)]

Brain virtual histology with X-ray phase-contrast tomography Part II: 3D morphologies of amyloid-β plaques in Alzheimer’s disease models

Matthieu Chourrout, Margaux Roux, Carlie Boisvert, Coralie Gislard, David Legland, Ignacio Arganda-Carreras, Cécile Olivier, Françoise Peyrin, Hervé Boutin, Nicolas Rama, Thierry Baron, David Meyronet, Emmanuel Brun, Hugo Rositi, Marlène Wiart, and Fabien Chauveau

Biomed. Opt. Express 13(3), 1640-1653 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]