Expand this Topic clickable element to expand a topic
Skip to content
Optica Publishing Group
Conferences > BODA > 2023 > DTh2C > DTh2C.4

Localization-based spot decoding for accurate multiplexed RNA-FISH at scale

Alexis Coullomb, Peter Brown, and Douglas Shepherd

Not Accessible

Your library or personal account may give you access

Abstract

A new spot decoding method allows to infer at scale and more accurately mRNA species from 3D spots localized with a physics-based approach in big datasets of barcoded RNA-FISH experiments.

© 2023 The Author(s)

PDF Article  |   Presentation Video
More Like This
Terahertz spectroscopy of RNA and DNA and spot array imaging

Matthias Hoffmann, Bernd M. Fischer, and Peter Uhd Jepsen
WB2 Optical Terahertz Science and Technology (OTST) 2005

Single molecule analysis of yeast Rrp44 exonuclease reveals a spring-loaded mechanism of RNA unwinding

Gwangrog Lee, Matthew A. Bratkowski, Fang Ding, Ailong Ke, and Taekjip Ha
FTuO1 Frontiers in Optics (FiO) 2011

Three-dimensional localization of fluorescence spots with adapted MUSIC algorithm

Bernhard Scholz and Marcus Pfister
5138_114 European Conference on Biomedical Optics (ECBO) 2003

View More...

Presentation Video

Presentation video access is available to:

  1. Optica Publishing Group subscribers
  2. Technical meeting attendees
  3. Optica members who wish to use one of their free downloads. Please download the article first. After downloading, please refresh this page.

Contact your librarian or system administrator
or
Log in to access Optica Member Subscription or free downloads

More Like This
Terahertz spectroscopy of RNA and DNA and spot array imaging

Matthias Hoffmann, Bernd M. Fischer, and Peter Uhd Jepsen
WB2 Optical Terahertz Science and Technology (OTST) 2005

Single molecule analysis of yeast Rrp44 exonuclease reveals a spring-loaded mechanism of RNA unwinding

Gwangrog Lee, Matthew A. Bratkowski, Fang Ding, Ailong Ke, and Taekjip Ha
FTuO1 Frontiers in Optics (FiO) 2011

Three-dimensional localization of fluorescence spots with adapted MUSIC algorithm

Bernhard Scholz and Marcus Pfister
5138_114 European Conference on Biomedical Optics (ECBO) 2003

View More...
Combinatorial barcoding of cells with Laser Particles

Nicola Martino, Hao Yan, Kwon-Hyeon Kim, Paul H. Dannenberg, Yue Wu, Geoffrey Abbot, Han Zhu, Sheldon J.J. Kwok, and Seok-Hyun Yun
DM2A.2 Bio-Optics: Design and Application (BODA) 2023

A Combination of Supervised Encoder-Decoder Neural Networks with Time-multiplexed Coded Apertures for Gamma and Lensless Imaging

Yossef Danan, Amir Shemer, Eliezer Danan, and Ariel Schwarz
JW2A.10 Applied Industrial Spectroscopy (AIS) 2023

Select as filters
Select Topics Cancel
Top
       
© Copyright 2024 | Optica Publishing Group. All rights reserved, including rights for text and data mining and training of artificial technologies or similar technologies.
Privacy | Terms of Use