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[Crossref]
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D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz, R. Guiet, C. Vonesch, and M. Unser, “Deconvolutionlab2: An open-source software for deconvolution microscopy,” Methods 115, 28–41 (2017).

[Crossref]
[PubMed]

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[Crossref]
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[Crossref]

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[Crossref]
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[Crossref]
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[Crossref]
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[Crossref]
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[Crossref]
[PubMed]

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[Crossref]

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[Crossref]
[PubMed]

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[Crossref]

P. Theer, C. Mongis, and M. Knop, “PSFj: know your fluorescence microscope,” Nat. Methods 11, 981–982 (2014).

[Crossref]
[PubMed]

J.-S. Lee, T.-L. E. Wee, and C. M. Brown, “Calibration of wide-field deconvolution microscopy for quantitative fluorescence imaging,” J. Biomol. Tech. 25, 31 (2014).

[Crossref]
[PubMed]

J. Li, F. Luisier, and T. Blu, “PURE-LET Image Deconvolution,” IEEE Trans. Image Process. 27, 92–105 (2018).

[Crossref]

J. Li, F. Xue, and T. Blu, “Fast and accurate three-dimensional point spread function computation for fluorescence microscopy,” J. Opt. Soc. Am. A 34, 1029–1034 (2017).

[Crossref]

J. Li, F. Xue, and T. Blu, “Accurate 3D PSF estimation from a wide-field microscopy image,” in Proceedings of IEEE International Symposium on Biomedical Imaging, (IEEE, 2018), pp. 501–504.

J. Li, F. Xue, and T. Blu, “Gaussian blur estimation for photon-limited images,” in Proceedings of IEEE International Conference on Image Processing (IEEE, 2017), pp. 495–499.

J. Li, F. Luisier, and T. Blu, “PURE-LET deconvolution of 3D fluorescence microscopy images,” in Proceedings of IEEE International Symposium on Biomedical Imaging (IEEE, 2017), pp. 723–727.

Y. Li, M. Mund, P. Hoess, U. Matti, B. Nijmeijer, V. J. Sabinina, J. Ellenberg, I. Schoen, and J. Ries, “Fast, robust and precise 3d localization for arbitrary point spread functions,” bioRxiv 172643; doi: https://doi.org/10.1101/172643 .

J. Li, F. Luisier, and T. Blu, “PURE-LET Image Deconvolution,” IEEE Trans. Image Process. 27, 92–105 (2018).

[Crossref]

F. Luisier, T. Blu, and M. Unser, “Image denoising in mixed Poisson-Gaussian noise,” IEEE Trans. Image Process. 20, 696–708 (2011).

[Crossref]

J. Li, F. Luisier, and T. Blu, “PURE-LET deconvolution of 3D fluorescence microscopy images,” in Proceedings of IEEE International Symposium on Biomedical Imaging (IEEE, 2017), pp. 723–727.

D. Sage, H. Kirshner, T. Pengo, N. Stuurman, J. Min, S. Manley, and M. Unser, “Quantitative evaluation of software packages for single-molecule localization microscopy,” Nat. Methods 12, 717–724 (2015).

[Crossref]
[PubMed]

M. Štefko, B. Ottino, K. M. Douglass, and S. Manley, “Design principles for autonomous illumination control in localization microscopy,” bioRxiv 295519; doi: https://doi.org/10.1101/295519 .

Y. Li, M. Mund, P. Hoess, U. Matti, B. Nijmeijer, V. J. Sabinina, J. Ellenberg, I. Schoen, and J. Ries, “Fast, robust and precise 3d localization for arbitrary point spread functions,” bioRxiv 172643; doi: https://doi.org/10.1101/172643 .

D. Sage, H. Kirshner, T. Pengo, N. Stuurman, J. Min, S. Manley, and M. Unser, “Quantitative evaluation of software packages for single-molecule localization microscopy,” Nat. Methods 12, 717–724 (2015).

[Crossref]
[PubMed]

P. Theer, C. Mongis, and M. Knop, “PSFj: know your fluorescence microscope,” Nat. Methods 11, 981–982 (2014).

[Crossref]
[PubMed]

Y. Li, M. Mund, P. Hoess, U. Matti, B. Nijmeijer, V. J. Sabinina, J. Ellenberg, I. Schoen, and J. Ries, “Fast, robust and precise 3d localization for arbitrary point spread functions,” bioRxiv 172643; doi: https://doi.org/10.1101/172643 .

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[Crossref]
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[Crossref]

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[Crossref]

Y. Li, M. Mund, P. Hoess, U. Matti, B. Nijmeijer, V. J. Sabinina, J. Ellenberg, I. Schoen, and J. Ries, “Fast, robust and precise 3d localization for arbitrary point spread functions,” bioRxiv 172643; doi: https://doi.org/10.1101/172643 .

P. Pankajakshan, B. Zhang, L. Blanc-Féraud, Z. Kam, J.-C. Olivo-Marin, and J. Zerubia, “Blind deconvolution for thin-layered confocal imaging,” Appl. Opt. 48, 4437–4448 (2009).

[Crossref]
[PubMed]

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[Crossref]
[PubMed]

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D. Sage, H. Kirshner, T. Pengo, N. Stuurman, J. Min, S. Manley, and M. Unser, “Quantitative evaluation of software packages for single-molecule localization microscopy,” Nat. Methods 12, 717–724 (2015).

[Crossref]
[PubMed]

D. A. Fish, A. M. Brinicombe, E. R. Pike, J. G. Walker, and R. L. Algorithm, “Blind deconvolution by means of the Richardson-Lucy algorithm,” Appl. Opt. 12, 58–65 (1995).

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[Crossref]

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[Crossref]

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M. Keuper, T. Schmidt, M. Temerinac-Ott, J. Padeken, P. Heun, O. Ronneberger, and T. Brox, “Blind deconvolution of widefield fluorescence microscopic data by regularization of the optical transfer function (OTF),” in Proceedings of IEEE Conference on Computer Vision and Pattern Recognition (IEEE, 2013), pp. 2179–2186.

Y. Li, M. Mund, P. Hoess, U. Matti, B. Nijmeijer, V. J. Sabinina, J. Ellenberg, I. Schoen, and J. Ries, “Fast, robust and precise 3d localization for arbitrary point spread functions,” bioRxiv 172643; doi: https://doi.org/10.1101/172643 .

D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz, R. Guiet, C. Vonesch, and M. Unser, “Deconvolutionlab2: An open-source software for deconvolution microscopy,” Methods 115, 28–41 (2017).

[Crossref]
[PubMed]

D. Sage, H. Kirshner, T. Pengo, N. Stuurman, J. Min, S. Manley, and M. Unser, “Quantitative evaluation of software packages for single-molecule localization microscopy,” Nat. Methods 12, 717–724 (2015).

[Crossref]
[PubMed]

H. Kirshner, F. Aguet, D. Sage, and M. Unser, “3-D PSF fitting for fluorescence microscopy: implementation and localization application,” J. Microsc. 249, 13–25 (2013).

[Crossref]

J. Boulanger, C. Kervrann, P. Bouthemy, P. Elbau, J.-B. Sibarita, and J. Salamero, “Patch-based nonlocal functional for denoising fluorescence microscopy image sequences,” IEEE Trans. Med. Imag. 29, 442–454 (2010).

[Crossref]

P. Sarder and A. Nehorai, “Deconvolution methods for 3-D fluorescence microscopy images,” IEEE Signal Process. Mag. 23, 32–45 (2006).

[Crossref]

W. Wallace, L. H. Schaefer, and J. R. Swedlow, “A workingperson’s guide to deconvolution in light microscopy,” Biotechniques 31, 1076–1097 (2001).

[Crossref]

M. Keuper, T. Schmidt, M. Temerinac-Ott, J. Padeken, P. Heun, O. Ronneberger, and T. Brox, “Blind deconvolution of widefield fluorescence microscopic data by regularization of the optical transfer function (OTF),” in Proceedings of IEEE Conference on Computer Vision and Pattern Recognition (IEEE, 2013), pp. 2179–2186.

D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz, R. Guiet, C. Vonesch, and M. Unser, “Deconvolutionlab2: An open-source software for deconvolution microscopy,” Methods 115, 28–41 (2017).

[Crossref]
[PubMed]

Y. Li, M. Mund, P. Hoess, U. Matti, B. Nijmeijer, V. J. Sabinina, J. Ellenberg, I. Schoen, and J. Ries, “Fast, robust and precise 3d localization for arbitrary point spread functions,” bioRxiv 172643; doi: https://doi.org/10.1101/172643 .

M. Arigovindan, J. Shaevitz, J. McGowan, J. W. Sedat, and D. A. Agard, “A parallel product-convolution approach for representing depth varying point spread functions in 3D widefield microscopy based on principal component analysis,” Opt. Express 18, 6461–6476 (2010).

[Crossref]
[PubMed]

E. F. Y. Hom, F. Marchis, T. K. Lee, S. Haase, D. A. Agard, and J. W. Sedat, “AIDA: an adaptive image deconvolution algorithm with application to multi-frame and three-dimensional data,” J. Opt. Soc. Am. A 24, 1580–1600 (2007).

[Crossref]

Y. Hiraoka, J. W. Sedat, and D. A. Agard, “Determination of three-dimensional imaging properties of a light microscope system. partial confocal behavior in epifluorescence microscopy,” Biophys. J. 57, 325–333 (1990).

[Crossref]
[PubMed]

D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz, R. Guiet, C. Vonesch, and M. Unser, “Deconvolutionlab2: An open-source software for deconvolution microscopy,” Methods 115, 28–41 (2017).

[Crossref]
[PubMed]

L. Gao, L. Shao, B.-C. Chen, and E. Betzig, “3D live fluorescence imaging of cellular dynamics using Bessel beam plane illumination microscopy,” Nat. Protoc. 9, 1083–1101 (2014).

[Crossref]
[PubMed]

J. Boulanger, C. Kervrann, P. Bouthemy, P. Elbau, J.-B. Sibarita, and J. Salamero, “Patch-based nonlocal functional for denoising fluorescence microscopy image sequences,” IEEE Trans. Med. Imag. 29, 442–454 (2010).

[Crossref]

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[Crossref]
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[Crossref]
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[Crossref]
[PubMed]

C. Smith, M. Huisman, M. Siemons, D. Grünwald, and S. Stallinga, “Simultaneous measurement of emission color and 3d position of single molecules,” Opt. Express 24, 4996–5013 (2016).

[Crossref]
[PubMed]

D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz, R. Guiet, C. Vonesch, and M. Unser, “Deconvolutionlab2: An open-source software for deconvolution microscopy,” Methods 115, 28–41 (2017).

[Crossref]
[PubMed]

F. Soulez, L. Denis, Y. Tourneur, and É. Thiébaut, “Blind deconvolution of 3D data in wide field fluorescence microscopy,” in Proceedings of IEEE International Symposium on Biomedical Imaging (IEEE, 2012), pp. 1735–1738.

A. Small and S. Stahlheber, “Fluorophore localization algorithms for super-resolution microscopy,” Nat. Methods 11, 267–279 (2014).

[Crossref]
[PubMed]

M. Siemons, C. Hulleman, R. Thorsen, C. Smith, and S. Stallinga, “High precision wavefront control in point spread function engineering for single emitter localization,” Opt. Express 26, 8397–8416 (2018).

[Crossref]
[PubMed]

C. Smith, M. Huisman, M. Siemons, D. Grünwald, and S. Stallinga, “Simultaneous measurement of emission color and 3d position of single molecules,” Opt. Express 24, 4996–5013 (2016).

[Crossref]
[PubMed]

M. Štefko, B. Ottino, K. M. Douglass, and S. Manley, “Design principles for autonomous illumination control in localization microscopy,” bioRxiv 295519; doi: https://doi.org/10.1101/295519 .

S. Hell, G. Reiner, C. Cremer, and E. H. Stelzer, “Aberrations in confocal fluorescence microscopy induced by mismatches in refractive index,” J. Microsc. 169, 391–405 (1993).

[Crossref]

D. Sage, H. Kirshner, T. Pengo, N. Stuurman, J. Min, S. Manley, and M. Unser, “Quantitative evaluation of software packages for single-molecule localization microscopy,” Nat. Methods 12, 717–724 (2015).

[Crossref]
[PubMed]

W. Wallace, L. H. Schaefer, and J. R. Swedlow, “A workingperson’s guide to deconvolution in light microscopy,” Biotechniques 31, 1076–1097 (2001).

[Crossref]

M. Keuper, T. Schmidt, M. Temerinac-Ott, J. Padeken, P. Heun, O. Ronneberger, and T. Brox, “Blind deconvolution of widefield fluorescence microscopic data by regularization of the optical transfer function (OTF),” in Proceedings of IEEE Conference on Computer Vision and Pattern Recognition (IEEE, 2013), pp. 2179–2186.

P. Theer, C. Mongis, and M. Knop, “PSFj: know your fluorescence microscope,” Nat. Methods 11, 981–982 (2014).

[Crossref]
[PubMed]

F. Soulez, L. Denis, Y. Tourneur, and É. Thiébaut, “Blind deconvolution of 3D data in wide field fluorescence microscopy,” in Proceedings of IEEE International Symposium on Biomedical Imaging (IEEE, 2012), pp. 1735–1738.

F. Soulez, L. Denis, Y. Tourneur, and É. Thiébaut, “Blind deconvolution of 3D data in wide field fluorescence microscopy,” in Proceedings of IEEE International Symposium on Biomedical Imaging (IEEE, 2012), pp. 1735–1738.

D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz, R. Guiet, C. Vonesch, and M. Unser, “Deconvolutionlab2: An open-source software for deconvolution microscopy,” Methods 115, 28–41 (2017).

[Crossref]
[PubMed]

D. Sage, H. Kirshner, T. Pengo, N. Stuurman, J. Min, S. Manley, and M. Unser, “Quantitative evaluation of software packages for single-molecule localization microscopy,” Nat. Methods 12, 717–724 (2015).

[Crossref]
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