Heart structural remodeling in a mouse model of Duchenne cardiomyopathy revealed using optical polarization tractography [Invited]

Y. Wang, K. Zhang, D. Duan, and G. Yao

Biomed. Opt. Express 8(3), 1271-1276 (2017)  View: HTML | PDF  [Suppl. Mat. (8)]

Lateral resolution improvement of oversampled OCT images using Capon estimation of weighted subvolume contribution

Evgenia Bousi, Ioanna Zouvani, and Costas Pitris

Biomed. Opt. Express 8(3), 1319-1331 (2017)  View: HTML | PDF

Retinal oximetry in humans using visible-light optical coherence tomography [Invited]

Siyu Chen, Xiao Shu, Peter L. Nesper, Wenzhong Liu, Amani A. Fawzi, and Hao F. Zhang

Biomed. Opt. Express 8(3), 1415-1429 (2017)  View: HTML | PDF

Reduction of frame rate in full-field swept-source optical coherence tomography by numerical motion correction [Invited]

Clara Pfäffle, Hendrik Spahr, Dierck Hillmann, Helge Sudkamp, Gesa Franke, Peter Koch, and Gereon Hüttmann

Biomed. Opt. Express 8(3), 1499-1511 (2017)  View: HTML | PDF

Reflectance-based projection-resolved optical coherence tomography angiography [Invited]

Jie Wang, Miao Zhang, Thomas S. Hwang, Steven T. Bailey, David Huang, David J. Wilson, and Yali Jia

Biomed. Opt. Express 8(3), 1536-1548 (2017)  View: HTML | PDF

Computational optical coherence tomography [Invited]

Yuan-Zhi Liu, Fredrick A. South, Yang Xu, P. Scott Carney, and Stephen A. Boppart

Biomed. Opt. Express 8(3), 1549-1574 (2017)  View: HTML | PDF

Correlation of the derivative as a robust estimator of scatterer size in optical coherence tomography (OCT) [Invited]

M. Kassinopoulos, E. Bousi, I. Zouvani, and C. Pitris

Biomed. Opt. Express 8(3), 1598-1606 (2017)  View: HTML | PDF

Review of intraoperative optical coherence tomography: technology and applications [Invited]

Oscar M. Carrasco-Zevallos, Christian Viehland, Brenton Keller, Mark Draelos, Anthony N. Kuo, Cynthia A. Toth, and Joseph A. Izatt

Biomed. Opt. Express 8(3), 1607-1637 (2017)  View: HTML | PDF

Quantitative characteristics of sickle cell retinopathy in optical coherence tomography angiography

Minhaj Alam, Damber Thapa, Jennifer I. Lim, Dingcai Cao, and Xincheng Yao

Biomed. Opt. Express 8(3), 1741-1753 (2017)  View: HTML | PDF

Adaptive optics optical coherence tomography angiography for morphometric analysis of choriocapillaris [Invited]

Kazuhiro Kurokawa, Zhuolin Liu, and Donald T. Miller

Biomed. Opt. Express 8(3), 1803-1822 (2017)  View: HTML | PDF  [Suppl. Mat. (2)]

Embryonic aortic arch hemodynamics are a functional biomarker for ethanol-induced congenital heart defects [Invited]

Lindsy M. Peterson, Shi Gu, Ganga Karunamuni, Michael W. Jenkins, Michiko Watanabe, and Andrew M. Rollins

Biomed. Opt. Express 8(3), 1823-1837 (2017)  View: HTML | PDF

Polarization sensitive optical coherence tomography – a review [Invited]

Johannes F. de Boer, Christoph K. Hitzenberger, and Yoshiaki Yasuno

Biomed. Opt. Express 8(3), 1838-1873 (2017)  View: HTML | PDF

Joint retinal layer and fluid segmentation in OCT scans of eyes with severe macular edema using unsupervised representation and auto-context

Alessio Montuoro, Sebastian M. Waldstein, Bianca S. Gerendas, Ursula Schmidt-Erfurth, and Hrvoje Bogunović

Biomed. Opt. Express 8(3), 1874-1888 (2017)  View: HTML | PDF

Persistent luminescence tomography for small animal imaging

Xu Cao, Yuzhu Gong, Yang Li, Shouping Zhu, Xuanxuan Zhang, Yonghua Zhan, Fei Kang, Jing Wang, and Jimin Liang

Biomed. Opt. Express 8(3), 1466-1476 (2017)  View: HTML | PDF

Geometrically complex 3D-printed phantoms for diffuse optical imaging

Laura A. Dempsey, Melissa Persad, Samuel Powell, Danial Chitnis, and Jeremy C. Hebden

Biomed. Opt. Express 8(3), 1754-1762 (2017)  View: HTML | PDF

Lookup table-based sampling of the phase function for Monte Carlo simulations of light propagation in turbid media

Peter Naglič, Franjo Pernuš, Boštjan Likar, and Miran Bürmen

Biomed. Opt. Express 8(3), 1895-1910 (2017)  View: HTML | PDF

Endoscope field of view measurement

Quanzeng Wang, Azadeh Khanicheh, Dennis Leiner, David Shafer, and Jurgen Zobel

Biomed. Opt. Express 8(3), 1441-1454 (2017)  View: HTML | PDF

Development of a multimodal foveated endomicroscope for the detection of oral cancer

Adam Shadfan, Hawraa Darwiche, Jesus Blanco, Ann Gillenwater, Rebecca Richards-Kortum, and Tomasz S. Tkaczyk

Biomed. Opt. Express 8(3), 1525-1535 (2017)  View: HTML | PDF

Scattering and absorption control in biocompatible fibers towards equalized photobiomodulation

J. George, H. Haghshenas, D. d’Hemecourt, W. Zhu, L. Zhang, and V. Sorger

Biomed. Opt. Express 8(3), 1589-1597 (2017)  View: HTML | PDF

Amplitude-selective filtering for remote-PPG

Wenjin Wang, Albertus C. den Brinker, Sander Stuijk, and Gerard de Haan

Biomed. Opt. Express 8(3), 1965-1980 (2017)  View: HTML | PDF

Subsampled phase retrieval for temporal resolution enhancement in lensless on-chip holographic video

Donghun Ryu, Zihao Wang, Kuan He, Guoan Zheng, Roarke Horstmeyer, and Oliver Cossairt

Biomed. Opt. Express 8(3), 1981-1995 (2017)  View: HTML | PDF  [Suppl. Mat. (3)]

State space approach to single molecule localization in fluorescence microscopy

Milad R. Vahid, Jerry Chao, Dongyoung Kim, E. Sally Ward, and Raimund J. Ober

Biomed. Opt. Express 8(3), 1332-1355 (2017)  View: HTML | PDF

Optically sectioned wide-field fluorescence lifetime imaging microscopy enabled by structured illumination

Taylor Hinsdale, Cory Olsovsky, Jose J. Rico-Jimenez, Kristen C. Maitland, Javier A. Jo, and Bilal H. Malik

Biomed. Opt. Express 8(3), 1455-1465 (2017)  View: HTML | PDF

Fluorescence quenching of free and bound NADH in HeLa cells determined by hyperspectral imaging and unmixing of cell autofluorescence

Aziz Ul Rehman, Ayad G. Anwer, Martin E. Gosnell, Saabah B. Mahbub, Guozhen Liu, and Ewa M. Goldys

Biomed. Opt. Express 8(3), 1488-1498 (2017)  View: HTML | PDF

Autofocus method for automated microscopy using embedded GPUs

J. M. Castillo-Secilla, M. Saval-Calvo, L. Medina-Valdès, S. Cuenca-Asensi, A. Martínez-Álvarez, C. Sánchez, and G. Cristóbal

Biomed. Opt. Express 8(3), 1731-1740 (2017)  View: HTML | PDF

Multimodal nonlinear optical microscopy reveals critical role of kinesin-1 in cartilage development

Sicong He, Wenqian Xue, Zhigang Duan, Qiqi Sun, Xuesong Li, Huiyan Gan, Jiandong Huang, and Jianan Y. Qu

Biomed. Opt. Express 8(3), 1771-1782 (2017)  View: HTML | PDF

Autofluorescence imaging captures heterogeneous drug response differences between 2D and 3D breast cancer cultures

T. M. Cannon, A. T. Shah, and M. C. Skala

Biomed. Opt. Express 8(3), 1911-1925 (2017)  View: HTML | PDF

Lenslet array tunable snapshot imaging spectrometer (LATIS) for hyperspectral fluorescence microscopy

Jason G. Dwight and Tomasz S. Tkaczyk

Biomed. Opt. Express 8(3), 1950-1964 (2017)  View: HTML | PDF

In vivo pentamodal tomographic imaging for small animals

Muhan Liu, Hongbo Guo, Hongbo Liu, Zeyu Zhang, Chongwei Chi, Hui Hui, Di Dong, Zhenhua Hu, and Jie Tian

Biomed. Opt. Express 8(3), 1356-1371 (2017)  View: HTML | PDF

Multimodal evaluation of ultra-short laser pulses treatment for skin burn injuries

Moises Oliveira Dos Santos, Anne Latrive, Pedro Arthur Augusto De Castro, Wagner De Rossi, Telma Maria Tenorio Zorn, Ricardo Elgul Samad, Anderson Zanardi Freitas, Carlos Lenz Cesar, Nilson Dias Vieira Junior, and Denise Maria Zezell

Biomed. Opt. Express 8(3), 1575-1588 (2017)  View: HTML | PDF

Simulation of nanoparticle-mediated near-infrared thermal therapy using GATE

Vesna Cuplov, Frédéric Pain, and Sébastien Jan

Biomed. Opt. Express 8(3), 1665-1681 (2017)  View: HTML | PDF

Label-free protein sensing by employing blue phase liquid crystal

Mon-Juan Lee, Chung-Huan Chang, and Wei Lee

Biomed. Opt. Express 8(3), 1712-1720 (2017)  View: HTML | PDF

Three-dimensional multi-contrast imaging of in vivo human skin by Jones matrix optical coherence tomography

En Li, Shuichi Makita, Young-Joo Hong, Deepa Kasaragod, and Yoshiaki Yasuno

Biomed. Opt. Express 8(3), 1290-1305 (2017)  View: HTML | PDF  [Suppl. Mat. (1)]

Automated boundary detection of the optic disc and layer segmentation of the peripapillary retina in volumetric structural and angiographic optical coherence tomography

Pengxiao Zang, Simon S. Gao, Thomas S. Hwang, Christina J. Flaxel, David J. Wilson, John C. Morrison, David Huang, Dengwang Li, and Yali Jia

Biomed. Opt. Express 8(3), 1306-1318 (2017)  View: HTML | PDF

Dermoscopy guided dark-field multi-functional optical coherence tomography

Soonjae Kwon, Yeoreum Yoon, Bumju Kim, Won Hyuk Jang, Byungho Oh, Kee Yang Chung, and Ki Hean Kim

Biomed. Opt. Express 8(3), 1372-1381 (2017)  View: HTML | PDF  [Suppl. Mat. (4)]

Pixel-based speckle adjustment for noise reduction in Fourier-domain OCT images

Anqi Zhang, Jiefeng Xi, Jitao Sun, and Xingde Li

Biomed. Opt. Express 8(3), 1721-1730 (2017)  View: HTML | PDF

Three-dimensional eye motion correction by Lissajous scan optical coherence tomography

Yiwei Chen, Young-Joo Hong, Shuichi Makita, and Yoshiaki Yasuno

Biomed. Opt. Express 8(3), 1783-1802 (2017)  View: HTML | PDF  [Suppl. Mat. (4)]

Automated intraretinal segmentation of SD-OCT images in normal and age-related macular degeneration eyes

Luis de Sisternes, Gowtham Jonna, Jason Moss, Michael F. Marmor, Theodore Leng, and Daniel L. Rubin

Biomed. Opt. Express 8(3), 1926-1949 (2017)  View: HTML | PDF

Optoacoustic response of gold nanorods in soft phantoms using high-power diode laser assemblies at 870 and 905 nm

L. Leggio, S. Gawali, D. Gallego, S. Rodríguez, M. Sánchez, G. Carpintero, and H. Lamela

Biomed. Opt. Express 8(3), 1430-1440 (2017)  View: HTML | PDF

Interstitial photoacoustic spectral analysis: instrumentation and validation

Haonan Zhang, Wan-yu Chao, Qian Cheng, Shengsong Huang, Xueding Wang, Denglong Wu, and Guan Xu

Biomed. Opt. Express 8(3), 1689-1697 (2017)  View: HTML | PDF

Flexible silicon sensors for diffuse reflectance spectroscopy of tissue

David M. Miller and Nan M. Jokerst

Biomed. Opt. Express 8(3), 1512-1524 (2017)  View: HTML | PDF

Early biomarker for radiation-induced wounds: day one post-irradiation assessment using hemoglobin concentration measured from diffuse optical reflectance spectroscopy

Lee C. L. Chin, Elina K. Cook, Darren Yohan, Anthony Kim, Carolyn Niu, Brian C. Wilson, and Stanley K. Liu

Biomed. Opt. Express 8(3), 1682-1688 (2017)  View: HTML | PDF

Infrared radiative properties and thermal modeling of ceramic-embedded textile fabrics

David M. Anderson, John R. Fessler, Matthew A. Pooley, Scott Seidel, Michael R. Hamblin, Haskell W. Beckham, and James F. Brennan

Biomed. Opt. Express 8(3), 1698-1711 (2017)  View: HTML | PDF

Measurement of multispectral scattering properties in mouse brain tissue

Eunjung Min, Sungbea Ban, Yanyan Wang, Sung Chul Bae, Gabriel Popescu, Catherine Best-Popescu, and Woonggyu Jung

Biomed. Opt. Express 8(3), 1763-1770 (2017)  View: HTML | PDF

Performance of a differential contrast sensitivity method to measure intraocular scattering

Alexandros Pennos, Harilaos Ginis, Augusto Arias, Dimitrios Christaras, and Pablo Artal

Biomed. Opt. Express 8(3), 1382-1389 (2017)  View: HTML | PDF

Chemical basis for alteration of an intraocular lens using a femtosecond laser

Josef F. Bille, Johann Engelhardt, Hans-Robert Volpp, Abdelmoutalib Laghouissa, Marcus Motzkus, Zhongxiang Jiang, and Ruth Sahler

Biomed. Opt. Express 8(3), 1390-1404 (2017)  View: HTML | PDF

Hyperopic Q-optimized algorithms: a theoretical study on factors influencing optical quality

Jose R. Jiménez, Aixa Alarcón, Rosario G. Anera, and L. Jiménez Del Barco

Biomed. Opt. Express 8(3), 1405-1414 (2017)  View: HTML | PDF

TuebingenCSTest – a useful method to assess the contrast sensitivity function

Tim Schilling, Arne Ohlendorf, Alexander Leube, and Siegfried Wahl

Biomed. Opt. Express 8(3), 1477-1487 (2017)  View: HTML | PDF

Validation of a spectral light scattering method to differentiate large from small particles in intraocular lenses

Grzegorz Łabuz, Eleni Papadatou, Fernando Vargas-Martín, Norberto López-Gil, Nicolaas J. Reus, and Thomas J. T. P van den Berg

Biomed. Opt. Express 8(3), 1889-1894 (2017)  View: HTML | PDF