Golden angle based scanning for robust corneal topography with OCT

Joerg Wagner, David Goldblum, and Philippe C. Cattin

Biomed. Opt. Express 8(2), 475-483 (2017)  View: HTML | PDF

Multifrequency-swept optical coherence microscopy for highspeed full-field tomographic vibrometry in biological tissues

Samuel Choi, Keita Sato, Takeru Ota, Fumiaki Nin, Shogo Muramatsu, and Hiroshi Hibino

Biomed. Opt. Express 8(2), 608-621 (2017)  View: HTML | PDF

En face coherence microscopy [Invited]

Olivier Thouvenin, Kate Grieve, Peng Xiao, Clement Apelian, and A. Claude Boccara

Biomed. Opt. Express 8(2), 622-639 (2017)  View: HTML | PDF

Noise stochastic corrected maximum a posteriori estimator for birefringence imaging using polarization-sensitive optical coherence tomography

Deepa Kasaragod, Shuichi Makita, Young-Joo Hong, and Yoshiaki Yasuno

Biomed. Opt. Express 8(2), 653-669 (2017)  View: HTML | PDF

OCT intensity and phase fluctuations correlated with activity-dependent neuronal calcium dynamics in the Drosophila CNS [Invited]

Minh Q. Tong, Md. Monirul Hasan, Sang Soo Lee, Md. Rezuanul Haque, Do-Hyoung Kim, Md. Shahidul Islam, Michael E. Adams, and B. Hyle Park

Biomed. Opt. Express 8(2), 726-735 (2017)  View: HTML | PDF  [Suppl. Mat. (1)]

Hematocrit dependence of flow signal in optical coherence tomography angiography

Jianlong Yang, Johnny Su, Jie Wang, Silu Men, Yali Jia, David Huang, and Gangjun Liu

Biomed. Opt. Express 8(2), 776-789 (2017)  View: HTML | PDF

Sub-micrometer axial resolution OCT for in-vivo imaging of the cellular structure of healthy and keratoconic human corneas

Kostadinka Bizheva, Bingyao Tan, Benjamin MacLelan, Olivera Kralj, Mojtaba Hajialamdari, Denise Hileeto, and Luigina Sorbara

Biomed. Opt. Express 8(2), 800-812 (2017)  View: HTML | PDF

Gabor fusion master slave optical coherence tomography

Ramona Cernat, Adrian Bradu, Niels Møller Israelsen, Ole Bang, Sylvain Rivet, Pearse A. Keane, David-Garway Heath, Ranjan Rajendram, and Adrian Podoleanu

Biomed. Opt. Express 8(2), 813-827 (2017)  View: HTML | PDF  [Suppl. Mat. (1)]

High-speed OCT light sources and systems [Invited]

Thomas Klein and Robert Huber

Biomed. Opt. Express 8(2), 828-859 (2017)  View: HTML | PDF

Methods to assess sensitivity of optical coherence tomography systems

Anant Agrawal, T. Joshua Pfefer, Peter D. Woolliams, Peter H. Tomlins, and George Nehmetallah

Biomed. Opt. Express 8(2), 902-917 (2017)  View: HTML | PDF

OCT-based full crystalline lens shape change during accommodation in vivo

Eduardo Martinez-Enriquez, Pablo Pérez-Merino, Miriam Velasco-Ocana, and Susana Marcos

Biomed. Opt. Express 8(2), 918-933 (2017)  View: HTML | PDF

Ultra-fast line-field low coherence holographic elastography using spatial phase shifting

Chih-Hao Liu, Alexander Schill, Raksha Raghunathan, Chen Wu, Manmohan Singh, Zhaolong Han, Achuth Nair, and Kirill V. Larin

Biomed. Opt. Express 8(2), 993-1004 (2017)  View: HTML | PDF

Fully integrated optical coherence tomography, ultrasound, and indocyanine green-based fluorescence tri-modality system for intravascular imaging

Yan Li, Joseph Jing, Yueqiao Qu, Yusi Miao, Buyun Zhang, Teng Ma, Mingyue Yu, Qifa Zhou, and Zhongping Chen

Biomed. Opt. Express 8(2), 1036-1044 (2017)  View: HTML | PDF

Coherence properties of short cavity swept lasers

Bart Johnson, Walid Atia, Mark Kuznetsov, Brian D. Goldberg, Peter Whitney, and Dale C. Flanders

Biomed. Opt. Express 8(2), 1045-1055 (2017)  View: HTML | PDF

Optical coherence tomography based angiography [Invited]

Chieh-Li Chen and Ruikang K. Wang

Biomed. Opt. Express 8(2), 1056-1082 (2017)  View: HTML | PDF

Automated detection of dilated capillaries on optical coherence tomography angiography

Changlei Dongye, Miao Zhang, Thomas S. Hwang, Jie Wang, Simon S. Gao, Liang Liu, David Huang, David J. Wilson, and Yali Jia

Biomed. Opt. Express 8(2), 1101-1109 (2017)  View: HTML | PDF

VCSEL-based swept source for low-cost optical coherence tomography

Sucbei Moon and Eun Seo Choi

Biomed. Opt. Express 8(2), 1110-1121 (2017)  View: HTML | PDF

Measurement of dynamic cell-induced 3D displacement fields in vitro for traction force optical coherence microscopy

Jeffrey A. Mulligan, François Bordeleau, Cynthia A. Reinhart-King, and Steven G. Adie

Biomed. Opt. Express 8(2), 1152-1171 (2017)  View: HTML | PDF  [Suppl. Mat. (2)]

Optical coherence elastography – OCT at work in tissue biomechanics [Invited]

Kirill V. Larin and David D. Sampson

Biomed. Opt. Express 8(2), 1172-1202 (2017)  View: HTML | PDF

Deep feature learning for automatic tissue classification of coronary artery using optical coherence tomography

Atefeh Abdolmanafi, Luc Duong, Nagib Dahdah, and Farida Cheriet

Biomed. Opt. Express 8(2), 1203-1220 (2017)  View: HTML | PDF

Ultrahigh-resolution OCT imaging of the human cornea

René M. Werkmeister, Sabina Sapeta, Doreen Schmidl, Gerhard Garhöfer, Gerald Schmidinger, Valentin Aranha dos Santos, Gerold C. Aschinger, Isabella Baumgartner, Niklas Pircher, Florian Schwarzhans, Anca Pantalon, Harminder Dua, and Leopold Schmetterer

Biomed. Opt. Express 8(2), 1221-1239 (2017)  View: HTML | PDF

Normalization of compression-induced hemodynamics in patients responding to neoadjuvant chemotherapy monitored by dynamic tomographic optical breast imaging (DTOBI)

Amir Y. Sajjadi, Steven J. Isakoff, Bin Deng, Bhawana Singh, Christy M. Wanyo, Qianqian Fang, Michelle C. Specht, Lidia Schapira, Beverly Moy, Aditya Bardia, David A. Boas, and Stefan A. Carp

Biomed. Opt. Express 8(2), 555-569 (2017)  View: HTML | PDF

Clinically compatible flexible wide-field multi-color fluorescence endoscopy with a porcine colon model

Gyugnseok Oh, Youngrong Park, Su Woong Yoo, Soonjoo Hwang, Alexey V. Dan Chin-Yu, Yeon-Mi Ryu, Sang-Yeob Kim, Eun-Ju Do, Ki Hean Kim, Sungjee Kim, Seung-Jae Myung, and Euiheon Chung

Biomed. Opt. Express 8(2), 764-775 (2017)  View: HTML | PDF

Joint alignment of multispectral images via semidefinite programming

Yuanjie Zheng, Yu Wang, Wanzhen Jiao, Sujuan Hou, Yanju Ren, Maoling Qin, Dewen Hou, Chao Luo, Hong Wang, James Gee, and Bojun Zhao

Biomed. Opt. Express 8(2), 890-901 (2017)  View: HTML | PDF

CMOS based image cytometry for detection of phytoplankton in ballast water

J. M. Pérez, M. Jofre, P. Martínez, M. A. Yáñez, V. Catalan, A. Parker, M. Veldhuis, and V. Pruneri

Biomed. Opt. Express 8(2), 1240-1249 (2017)  View: HTML | PDF

Quantitative three-dimensional evaluation of immunofluorescence staining for large whole mount spheroids with light sheet microscopy

I. Smyrek and E. H. K. Stelzer

Biomed. Opt. Express 8(2), 484-499 (2017)  View: HTML | PDF

Label-free fingerprinting of tumor cells in bulk flow using inline digital holographic microscopy

Dhananjay Kumar Singh, Caroline C. Ahrens, Wei Li, and Siva A. Vanapalli

Biomed. Opt. Express 8(2), 536-554 (2017)  View: HTML | PDF

Cellular resolution multiplexed FLIM tomography with dual-color Bessel beam

Dongli Xu, Weibin Zhou, and Leilei Peng

Biomed. Opt. Express 8(2), 570-578 (2017)  View: HTML | PDF  [Suppl. Mat. (3)]

Time-stretch microscopy on a DVD for high-throughput imaging cell-based assay

Anson H. L. Tang, P. Yeung, Godfrey C. F. Chan, Barbara P. Chan, Kenneth K. Y. Wong, and Kevin K. Tsia

Biomed. Opt. Express 8(2), 640-652 (2017)  View: HTML | PDF

Structured illumination microscopy with unknown patterns and a statistical prior

Li-Hao Yeh, Lei Tian, and Laura Waller

Biomed. Opt. Express 8(2), 695-711 (2017)  View: HTML | PDF

Label-free imaging of amyloids using their intrinsic linear and nonlinear optical properties

Patrik K. Johansson and Patrick Koelsch

Biomed. Opt. Express 8(2), 743-756 (2017)  View: HTML | PDF  [Suppl. Mat. (4)]

Detecting ordered small molecule drug aggregates in live macrophages: a multi-parameter microscope image data acquisition and analysis strategy

Phillip Rzeczycki, Gi Sang Yoon, Rahul K. Keswani, Sudha Sud, Kathleen A. Stringer, and Gus R. Rosania

Biomed. Opt. Express 8(2), 860-872 (2017)  View: HTML | PDF

Core/shell nanofiber characterization by Raman scanning microscopy

Lauren Sfakis, Anna Sharikova, David Tuschel, Felipe Xavier Costa, Melinda Larsen, Alexander Khmaladze, and James Castracane

Biomed. Opt. Express 8(2), 1025-1035 (2017)  View: HTML | PDF

Label-free cell-substrate adhesion imaging on plasmonic nanocup arrays

L. P. Hackett, S. Seo, S. Kim, L. L. Goddard, and G. L. Liu

Biomed. Opt. Express 8(2), 1139-1151 (2017)  View: HTML | PDF

Continuous multi-modality brain imaging reveals modified neurovascular seizure response after intervention

Dene Ringuette, Melanie A. Jeffrey, Suzie Dufour, Peter L. Carlen, and Ofer Levi

Biomed. Opt. Express 8(2), 873-889 (2017)  View: HTML | PDF

Transfer learning based classification of optical coherence tomography images with diabetic macular edema and dry age-related macular degeneration

S. P. K. Karri, Debjani Chakraborty, and Jyotirmoy Chatterjee

Biomed. Opt. Express 8(2), 579-592 (2017)  View: HTML | PDF

Qualitative and quantitative evaluation of in vivo SD-OCT measurement of rat brain

Yijing Xie, Laura-Adela Harsan, Thomas Bienert, Robert D. Kirch, Dominik Von Elverfeldt, and Ulrich G. Hofmann

Biomed. Opt. Express 8(2), 593-607 (2017)  View: HTML | PDF

Longitudinal correlation of 3D OCT to detect early stage erosion in bovine enamel

Abdirahman Aden, Paul Anderson, Gary R. Burnett, Richard J. M. Lynch, and Peter H. Tomlins

Biomed. Opt. Express 8(2), 954-973 (2017)  View: HTML | PDF

Optimized sensitivity of Silicon-on-Insulator (SOI) strip waveguide resonator sensor

Sahba TalebiFard, Shon Schmidt, Wei Shi, WenXuan Wu, Nicolas A. F. Jaeger, Ezra Kwok, Daniel M. Ratner, and Lukas Chrostowski

Biomed. Opt. Express 8(2), 500-511 (2017)  View: HTML | PDF

Optical sorting and cultivation of denitrifying anaerobic methane oxidation archaea

Xiaoqiong Qi, David M. Carberry, Chen Cai, Shihu Hu, Zhiguo Yuan, Halina Rubinsztein-Dunlop, and Jianhua Guo

Biomed. Opt. Express 8(2), 934-942 (2017)  View: HTML | PDF

In vivo photoacoustic lipid imaging in mice using the second near-infrared window

Gurneet S. Sangha, Evan H. Phillips, and Craig J. Goergen

Biomed. Opt. Express 8(2), 736-742 (2017)  View: HTML | PDF

Ultrasound-guided spectral photoacoustic imaging of hemoglobin oxygenation during development

Carolyn L. Bayer, Bogdan J. Wlodarczyk, Richard H. Finnell, and Stanislav Y. Emelianov

Biomed. Opt. Express 8(2), 757-763 (2017)  View: HTML | PDF

Real-time volumetric lipid imaging in vivo by intravascular photoacoustics at 20 frames per second

Min Wu, Geert Springeling, Matija Lovrak, Frits Mastik, Sophinese Iskander-Rizk, Tianshi Wang, Heleen M. M. van Beusekom, A. F. W. van der Steen, and Gijs Van Soest

Biomed. Opt. Express 8(2), 943-953 (2017)  View: HTML | PDF  [Suppl. Mat. (2)]

Terahertz imaging of metastatic lymph nodes using spectroscopic integration technique

Jae Yeon Park, Hyuck Jae Choi, Hwayeong Cheon, Seong Whi Cho, Seungkoo Lee, and Joo-Hiuk Son

Biomed. Opt. Express 8(2), 1122-1129 (2017)  View: HTML | PDF

LIF spectroscopy of stained malignant breast tissues

Fatemeh Ghasemi, Parviz Parvin, Najme Sadat Hosseini Motlagh, and Shahriar Abachi

Biomed. Opt. Express 8(2), 512-523 (2017)  View: HTML | PDF

Clinical characterization of in vivo inflammatory bowel disease with Raman spectroscopy

Isaac J. Pence, Dawn B. Beaulieu, Sara N. Horst, Xiaohong Bi, Alan J. Herline, David A. Schwartz, and Anita Mahadevan-Jansen

Biomed. Opt. Express 8(2), 524-535 (2017)  View: HTML | PDF

In situ cellular level Raman spectroscopy of the thyroid

Alan Wing Lun Law, Rafay Ahmed, Tsz Wing Cheung, Chun Yu Mak, and Condon Lau

Biomed. Opt. Express 8(2), 670-678 (2017)  View: HTML | PDF

In vivo imaging of hepatic hemodynamics and light scattering property during ischemia-reperfusion in rats based on spectrocolorimetry

Sharmin Akter, Satoko Kawauchi, Shunichi Sato, Suefumi Aosasa, Junji Yamamoto, and Izumi Nishidate

Biomed. Opt. Express 8(2), 974-992 (2017)  View: HTML | PDF

Influence of water content on Raman spectroscopy characterization of skin sample

Soogeun Kim, Kyung Min Byun, and Soo Yeol Lee

Biomed. Opt. Express 8(2), 1130-1138 (2017)  View: HTML | PDF

Lactate based optical screening of dengue virus infection in human sera using Raman spectroscopy

Muhammad Bilal, Rahat Ullah, Saranjam Khan, Hina Ali, Muhammad Saleem, and Mushtaq Ahmed

Biomed. Opt. Express 8(2), 1250-1256 (2017)  View: HTML | PDF

Optics of the human cornea influence the accuracy of stereo eye-tracking methods: a simulation study

A. D. Barsingerhorn, F. N. Boonstra, and H. H. L. M. Goossens

Biomed. Opt. Express 8(2), 712-725 (2017)  View: HTML | PDF

Fully automated diagnosis of papilledema through robust extraction of vascular patterns and ocular pathology from fundus photographs

Khush Naseeb Fatima, Taimur Hassan, M. Usman Akram, Mahmood Akhtar, and Wasi Haider Butt

Biomed. Opt. Express 8(2), 1005-1024 (2017)  View: HTML | PDF

Influence of wave-front sampling in adaptive optics retinal imaging

Marie Laslandes, Matthias Salas, Christoph K. Hitzenberger, and Michael Pircher

Biomed. Opt. Express 8(2), 1083-1100 (2017)  View: HTML | PDF

Low-dose CT via convolutional neural network

Hu Chen, Yi Zhang, Weihua Zhang, Peixi Liao, Ke Li, Jiliu Zhou, and Ge Wang

Biomed. Opt. Express 8(2), 679-694 (2017)  View: HTML | PDF

X-ray phase microtomography with a single grating for high-throughput investigations of biological tissue

Marie-Christine Zdora, Joan Vila-Comamala, Georg Schulz, Anna Khimchenko, Alexander Hipp, Andrew C. Cook, Daniel Dilg, Christian David, Christian Grünzweig, Christoph Rau, Pierre Thibault, and Irene Zanette

Biomed. Opt. Express 8(2), 1257-1270 (2017)  View: HTML | PDF  [Suppl. Mat. (3)]