Abstract

The zebrafish, an ideal vertebrate for studying developmental biology and genetics, is increasingly being used to understand human diseases, due to its high similarity to the human genome and its optical transparency during embryonic stages. Once the zebrafish has fully developed, especially wild-type breeds, conventional optical imaging techniques have difficulty in imaging the internal organs and structures with sufficient resolution and penetration depth. Even with established mutant lines that remain transparent throughout their life cycle, it is still challenging for purely optical imaging modalities to visualize the organs of juvenile and adult zebrafish at a micro-scale spatial resolution. In this work, we developed a non-invasive three-dimensional photoacoustic imaging platform with an optimized illumination pattern and a cylindrical-scanning-based data collection system to image entire zebrafish with micro-scale resolutions of 80 μm and 600 μm in the lateral and axial directions, respectively. In addition, we employed a multispectral strategy that utilized excitation wavelengths from 690 nm to 930 nm to statistically quantify the relative optical absorption spectrum of major organs.

© 2016 Optical Society of America

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References

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2016 (1)

M. Fonseca, B. Zeqiri, P. C. Beard, and B. T. Cox, “Characterisation of a phantom for multiwavelength quantitative photoacoustic imaging,” Phys. Med. Biol. 61(13), 4950–4973 (2016).
[Crossref] [PubMed]

2015 (4)

G. Li, L. Li, L. Zhu, J. Xia, and L. V. Wang, “Multiview Hilbert transformation for full-view photoacoustic computed tomography using a linear array,” J. Biomed. Opt. 20(6), 066010 (2015).
[Crossref] [PubMed]

H. Lin, A. Chekkoury, M. Omar, T. Schmitt-Manderback, B. Koberstein-Schwarz, T. Mappes, H. Lopez-Schier, D. Razansky, and V. Ntziachristos, “Selective plane illumination optical and optoacoustic microscopy for postembryonic imaging,” Laser Photonics Rev. 9(5), L29–L34 (2015).
[Crossref]

E. Seo, J. H. Lim, S. J. Seo, and S. J. Lee, “Whole-body imaging of a hypercholesterolemic female zebrafish by using synchrotron X-ray micro-CT,” Zebrafish 12(1), 11–20 (2015).
[Crossref] [PubMed]

L. Xi and H. Jiang, “High resolution three-dimensional photoacoustic imaging of human finger joints in vivo,” Appl. Phys. Lett. 107(6), 063701 (2015).
[Crossref]

2014 (2)

2013 (4)

2012 (5)

R. Ma, M. Distel, X. L. Deán-Ben, V. Ntziachristos, and D. Razansky, “Non-invasive whole-body imaging of adult zebrafish with optoacoustic tomography,” Phys. Med. Biol. 57(22), 7227–7237 (2012).
[Crossref] [PubMed]

S. Ye, R. Yang, J. Xiong, K. K. Shung, Q. Zhou, C. Li, and Q. Ren, “Label-free imaging of zebrafish larvae in vivo by photoacoustic microscopy,” Biomed. Opt. Express 3(2), 360–365 (2012).
[Crossref] [PubMed]

L. Xi, S. R. Grobmyer, L. Wu, R. Chen, G. Zhou, L. G. Gutwein, J. Sun, W. Liao, Q. Zhou, H. Xie, and H. Jiang, “Evaluation of breast tumor margins in vivo with intraoperative photoacoustic imaging,” Opt. Express 20(8), 8726–8731 (2012).
[Crossref] [PubMed]

L. Xi, X. Li, L. Yao, S. Grobmyer, and H. Jiang, “Design and evaluation of a hybrid photoacoustic tomography and diffuse optical tomography system for breast cancer detection,” Med. Phys. 39(5), 2584–2594 (2012).
[Crossref] [PubMed]

L. V. Wang and S. Hu, “Photoacoustic tomography: in vivo imaging from organelles to organs,” Science 335(6075), 1458–1462 (2012).
[Crossref] [PubMed]

2011 (2)

P. Beard, “Biomedical photoacoustic imaging,” Interface Focus 1(4), 602–631 (2011).
[Crossref] [PubMed]

A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt. 16(10), 100502 (2011).
[Crossref] [PubMed]

2010 (3)

C. Zanella, M. Campana, B. Rizzi, C. Melani, G. Sanguinetti, P. Bourgine, K. Mikula, N. Peyrieras, and A. Sarti, “Cells segmentation from 3-D confocal images of early zebrafish embryogenesis,” IEEE Trans. Image Process. 19(3), 770–781 (2010).
[Crossref] [PubMed]

O. Bandmann and E. A. Burton, “Genetic zebrafish models of neurodegenerative diseases,” Neurobiol. Dis. 40(1), 58–65 (2010).
[Crossref] [PubMed]

S. Kabli, S. He, H. P. Spaink, A. Hurlstone, E. S. Jagalska, H. J. De Groot, and A. Alia, “In vivo magnetic resonance imaging to detect malignant melanoma in adult zebrafish,” Zebrafish 7(2), 143–148 (2010).
[Crossref] [PubMed]

2009 (2)

D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. Köster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics 3(7), 412–417 (2009).
[Crossref]

M. Kamali, L. J. Day, D. H. Brooks, X. Zhou, and D. M. O’Malley, “Automated identification of neurons in 3D confocal datasets from zebrafish brainstem,” J. Microsc. 233(1), 114–131 (2009).
[Crossref] [PubMed]

2008 (2)

R. M. White, A. Sessa, C. Burke, T. Bowman, J. LeBlanc, C. Ceol, C. Bourque, M. Dovey, W. Goessling, C. E. Burns, and L. I. Zon, “Transparent adult zebrafish as a tool for in vivo transplantation analysis,” Cell Stem Cell 2(2), 183–189 (2008).
[Crossref] [PubMed]

J. F. Amatruda and E. E. Patton, “Genetic models of cancer in zebrafish,” Int. Rev. Cell Mol. Biol. 271, 1–34 (2008).
[Crossref] [PubMed]

2007 (1)

W. Goessling, T. E. North, and L. I. Zon, “Ultrasound biomicroscopy permits in vivo characterization of zebrafish liver tumors,” Nat. Methods 4(7), 551–553 (2007).
[Crossref] [PubMed]

2004 (1)

J. Hove, “In vivo biofluid dynamic imaging in the developing Zebrafish. Birth Defects Res,” C Embryo 72, 277–289 (2004).

2003 (1)

D. M. Langenau, D. Traver, A. A. Ferrando, J. L. Kutok, J. C. Aster, J. P. Kanki, S. Lin, E. Prochownik, N. S. Trede, L. I. Zon, and A. T. Look, “Myc-induced T cell leukemia in transgenic zebrafish,” Science 299(5608), 887–890 (2003).
[Crossref] [PubMed]

2002 (2)

K. D. Poss, L. G. Wilson, and M. T. Keating, “Heart regeneration in Zebrafish,” Science 298(5601), 2188–2190 (2002).
[Crossref] [PubMed]

J. T. Shin and M. C. Fishman, “From zebrafish to human: modular medical models,” Annu. Rev. Genomics Hum. Genet. 3(1), 311–340 (2002).
[Crossref] [PubMed]

2001 (1)

S. Isogai, M. Horiguchi, and B. M. Weinstein, “The vascular anatomy of the developing zebrafish: an atlas of embryonic and early larval development,” Dev. Biol. 230(2), 278–301 (2001).
[Crossref] [PubMed]

1998 (1)

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Abduljabbar, T. S.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Alia, A.

S. Kabli, S. He, H. P. Spaink, A. Hurlstone, E. S. Jagalska, H. J. De Groot, and A. Alia, “In vivo magnetic resonance imaging to detect malignant melanoma in adult zebrafish,” Zebrafish 7(2), 143–148 (2010).
[Crossref] [PubMed]

Amatruda, J. F.

J. F. Amatruda and E. E. Patton, “Genetic models of cancer in zebrafish,” Int. Rev. Cell Mol. Biol. 271, 1–34 (2008).
[Crossref] [PubMed]

Amores, A.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Applegate, B. E.

Aster, J. C.

D. M. Langenau, D. Traver, A. A. Ferrando, J. L. Kutok, J. C. Aster, J. P. Kanki, S. Lin, E. Prochownik, N. S. Trede, L. I. Zon, and A. T. Look, “Myc-induced T cell leukemia in transgenic zebrafish,” Science 299(5608), 887–890 (2003).
[Crossref] [PubMed]

Bandmann, O.

O. Bandmann and E. A. Burton, “Genetic zebrafish models of neurodegenerative diseases,” Neurobiol. Dis. 40(1), 58–65 (2010).
[Crossref] [PubMed]

Bassi, A.

A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt. 16(10), 100502 (2011).
[Crossref] [PubMed]

Beard, P.

P. Beard, “Biomedical photoacoustic imaging,” Interface Focus 1(4), 602–631 (2011).
[Crossref] [PubMed]

Beard, P. C.

M. Fonseca, B. Zeqiri, P. C. Beard, and B. T. Cox, “Characterisation of a phantom for multiwavelength quantitative photoacoustic imaging,” Phys. Med. Biol. 61(13), 4950–4973 (2016).
[Crossref] [PubMed]

Beier, D.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Bourgine, P.

C. Zanella, M. Campana, B. Rizzi, C. Melani, G. Sanguinetti, P. Bourgine, K. Mikula, N. Peyrieras, and A. Sarti, “Cells segmentation from 3-D confocal images of early zebrafish embryogenesis,” IEEE Trans. Image Process. 19(3), 770–781 (2010).
[Crossref] [PubMed]

Bourque, C.

R. M. White, A. Sessa, C. Burke, T. Bowman, J. LeBlanc, C. Ceol, C. Bourque, M. Dovey, W. Goessling, C. E. Burns, and L. I. Zon, “Transparent adult zebrafish as a tool for in vivo transplantation analysis,” Cell Stem Cell 2(2), 183–189 (2008).
[Crossref] [PubMed]

Bowman, T.

R. M. White, A. Sessa, C. Burke, T. Bowman, J. LeBlanc, C. Ceol, C. Bourque, M. Dovey, W. Goessling, C. E. Burns, and L. I. Zon, “Transparent adult zebrafish as a tool for in vivo transplantation analysis,” Cell Stem Cell 2(2), 183–189 (2008).
[Crossref] [PubMed]

Brooks, D. H.

M. Kamali, L. J. Day, D. H. Brooks, X. Zhou, and D. M. O’Malley, “Automated identification of neurons in 3D confocal datasets from zebrafish brainstem,” J. Microsc. 233(1), 114–131 (2009).
[Crossref] [PubMed]

Brownlie, A.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Burke, C.

R. M. White, A. Sessa, C. Burke, T. Bowman, J. LeBlanc, C. Ceol, C. Bourque, M. Dovey, W. Goessling, C. E. Burns, and L. I. Zon, “Transparent adult zebrafish as a tool for in vivo transplantation analysis,” Cell Stem Cell 2(2), 183–189 (2008).
[Crossref] [PubMed]

Burns, C. E.

R. M. White, A. Sessa, C. Burke, T. Bowman, J. LeBlanc, C. Ceol, C. Bourque, M. Dovey, W. Goessling, C. E. Burns, and L. I. Zon, “Transparent adult zebrafish as a tool for in vivo transplantation analysis,” Cell Stem Cell 2(2), 183–189 (2008).
[Crossref] [PubMed]

Burton, E. A.

O. Bandmann and E. A. Burton, “Genetic zebrafish models of neurodegenerative diseases,” Neurobiol. Dis. 40(1), 58–65 (2010).
[Crossref] [PubMed]

Campana, M.

C. Zanella, M. Campana, B. Rizzi, C. Melani, G. Sanguinetti, P. Bourgine, K. Mikula, N. Peyrieras, and A. Sarti, “Cells segmentation from 3-D confocal images of early zebrafish embryogenesis,” IEEE Trans. Image Process. 19(3), 770–781 (2010).
[Crossref] [PubMed]

Ceol, C.

R. M. White, A. Sessa, C. Burke, T. Bowman, J. LeBlanc, C. Ceol, C. Bourque, M. Dovey, W. Goessling, C. E. Burns, and L. I. Zon, “Transparent adult zebrafish as a tool for in vivo transplantation analysis,” Cell Stem Cell 2(2), 183–189 (2008).
[Crossref] [PubMed]

Chekkoury, A.

H. Lin, A. Chekkoury, M. Omar, T. Schmitt-Manderback, B. Koberstein-Schwarz, T. Mappes, H. Lopez-Schier, D. Razansky, and V. Ntziachristos, “Selective plane illumination optical and optoacoustic microscopy for postembryonic imaging,” Laser Photonics Rev. 9(5), L29–L34 (2015).
[Crossref]

Chen, R.

Cox, B. T.

M. Fonseca, B. Zeqiri, P. C. Beard, and B. T. Cox, “Characterisation of a phantom for multiwavelength quantitative photoacoustic imaging,” Phys. Med. Biol. 61(13), 4950–4973 (2016).
[Crossref] [PubMed]

Cummins, T. M.

D’Andrea, C.

A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt. 16(10), 100502 (2011).
[Crossref] [PubMed]

Day, L. J.

M. Kamali, L. J. Day, D. H. Brooks, X. Zhou, and D. M. O’Malley, “Automated identification of neurons in 3D confocal datasets from zebrafish brainstem,” J. Microsc. 233(1), 114–131 (2009).
[Crossref] [PubMed]

De Groot, H. J.

S. Kabli, S. He, H. P. Spaink, A. Hurlstone, E. S. Jagalska, H. J. De Groot, and A. Alia, “In vivo magnetic resonance imaging to detect malignant melanoma in adult zebrafish,” Zebrafish 7(2), 143–148 (2010).
[Crossref] [PubMed]

Deán-Ben, X. L.

R. Ma, M. Distel, X. L. Deán-Ben, V. Ntziachristos, and D. Razansky, “Non-invasive whole-body imaging of adult zebrafish with optoacoustic tomography,” Phys. Med. Biol. 57(22), 7227–7237 (2012).
[Crossref] [PubMed]

Del Rio, S. P.

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H. Lin, A. Chekkoury, M. Omar, T. Schmitt-Manderback, B. Koberstein-Schwarz, T. Mappes, H. Lopez-Schier, D. Razansky, and V. Ntziachristos, “Selective plane illumination optical and optoacoustic microscopy for postembryonic imaging,” Laser Photonics Rev. 9(5), L29–L34 (2015).
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H. Lin, A. Chekkoury, M. Omar, T. Schmitt-Manderback, B. Koberstein-Schwarz, T. Mappes, H. Lopez-Schier, D. Razansky, and V. Ntziachristos, “Selective plane illumination optical and optoacoustic microscopy for postembryonic imaging,” Laser Photonics Rev. 9(5), L29–L34 (2015).
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D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. Köster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics 3(7), 412–417 (2009).
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M. Kamali, L. J. Day, D. H. Brooks, X. Zhou, and D. M. O’Malley, “Automated identification of neurons in 3D confocal datasets from zebrafish brainstem,” J. Microsc. 233(1), 114–131 (2009).
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H. Lin, A. Chekkoury, M. Omar, T. Schmitt-Manderback, B. Koberstein-Schwarz, T. Mappes, H. Lopez-Schier, D. Razansky, and V. Ntziachristos, “Selective plane illumination optical and optoacoustic microscopy for postembryonic imaging,” Laser Photonics Rev. 9(5), L29–L34 (2015).
[Crossref]

M. Omar, D. Soliman, J. Gateau, and V. Ntziachristos, “Ultrawideband reflection-mode optoacoustic mesoscopy,” Opt. Lett. 39(13), 3911–3914 (2014).
[Crossref] [PubMed]

Park, J.

Patton, E. E.

J. F. Amatruda and E. E. Patton, “Genetic models of cancer in zebrafish,” Int. Rev. Cell Mol. Biol. 271, 1–34 (2008).
[Crossref] [PubMed]

Paw, B.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Perrimon, N.

D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. Köster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics 3(7), 412–417 (2009).
[Crossref]

Peyrieras, N.

C. Zanella, M. Campana, B. Rizzi, C. Melani, G. Sanguinetti, P. Bourgine, K. Mikula, N. Peyrieras, and A. Sarti, “Cells segmentation from 3-D confocal images of early zebrafish embryogenesis,” IEEE Trans. Image Process. 19(3), 770–781 (2010).
[Crossref] [PubMed]

Poss, K. D.

K. D. Poss, L. G. Wilson, and M. T. Keating, “Heart regeneration in Zebrafish,” Science 298(5601), 2188–2190 (2002).
[Crossref] [PubMed]

Postlethwait, J. H.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Prochownik, E.

D. M. Langenau, D. Traver, A. A. Ferrando, J. L. Kutok, J. C. Aster, J. P. Kanki, S. Lin, E. Prochownik, N. S. Trede, L. I. Zon, and A. T. Look, “Myc-induced T cell leukemia in transgenic zebrafish,” Science 299(5608), 887–890 (2003).
[Crossref] [PubMed]

Ransom, D.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Razansky, D.

H. Lin, A. Chekkoury, M. Omar, T. Schmitt-Manderback, B. Koberstein-Schwarz, T. Mappes, H. Lopez-Schier, D. Razansky, and V. Ntziachristos, “Selective plane illumination optical and optoacoustic microscopy for postembryonic imaging,” Laser Photonics Rev. 9(5), L29–L34 (2015).
[Crossref]

R. Ma, M. Distel, X. L. Deán-Ben, V. Ntziachristos, and D. Razansky, “Non-invasive whole-body imaging of adult zebrafish with optoacoustic tomography,” Phys. Med. Biol. 57(22), 7227–7237 (2012).
[Crossref] [PubMed]

D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. Köster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics 3(7), 412–417 (2009).
[Crossref]

Reinecke, D. R.

R. A. Kruger, C. M. Kuzmiak, R. B. Lam, D. R. Reinecke, S. P. Del Rio, and D. Steed, “Dedicated 3D photoacoustic breast imaging,” Med. Phys. 40(11), 113301 (2013).
[Crossref] [PubMed]

Ren, Q.

Rizzi, B.

C. Zanella, M. Campana, B. Rizzi, C. Melani, G. Sanguinetti, P. Bourgine, K. Mikula, N. Peyrieras, and A. Sarti, “Cells segmentation from 3-D confocal images of early zebrafish embryogenesis,” IEEE Trans. Image Process. 19(3), 770–781 (2010).
[Crossref] [PubMed]

Rosa, F.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Salvenmoser, W.

Sandrian, M. G.

Sanguinetti, G.

C. Zanella, M. Campana, B. Rizzi, C. Melani, G. Sanguinetti, P. Bourgine, K. Mikula, N. Peyrieras, and A. Sarti, “Cells segmentation from 3-D confocal images of early zebrafish embryogenesis,” IEEE Trans. Image Process. 19(3), 770–781 (2010).
[Crossref] [PubMed]

Sarti, A.

C. Zanella, M. Campana, B. Rizzi, C. Melani, G. Sanguinetti, P. Bourgine, K. Mikula, N. Peyrieras, and A. Sarti, “Cells segmentation from 3-D confocal images of early zebrafish embryogenesis,” IEEE Trans. Image Process. 19(3), 770–781 (2010).
[Crossref] [PubMed]

Schmitner, N.

Schmitt-Manderback, T.

H. Lin, A. Chekkoury, M. Omar, T. Schmitt-Manderback, B. Koberstein-Schwarz, T. Mappes, H. Lopez-Schier, D. Razansky, and V. Ntziachristos, “Selective plane illumination optical and optoacoustic microscopy for postembryonic imaging,” Laser Photonics Rev. 9(5), L29–L34 (2015).
[Crossref]

Seo, E.

E. Seo, J. H. Lim, S. J. Seo, and S. J. Lee, “Whole-body imaging of a hypercholesterolemic female zebrafish by using synchrotron X-ray micro-CT,” Zebrafish 12(1), 11–20 (2015).
[Crossref] [PubMed]

Seo, S. J.

E. Seo, J. H. Lim, S. J. Seo, and S. J. Lee, “Whole-body imaging of a hypercholesterolemic female zebrafish by using synchrotron X-ray micro-CT,” Zebrafish 12(1), 11–20 (2015).
[Crossref] [PubMed]

Sessa, A.

R. M. White, A. Sessa, C. Burke, T. Bowman, J. LeBlanc, C. Ceol, C. Bourque, M. Dovey, W. Goessling, C. E. Burns, and L. I. Zon, “Transparent adult zebrafish as a tool for in vivo transplantation analysis,” Cell Stem Cell 2(2), 183–189 (2008).
[Crossref] [PubMed]

Shelton, R. L.

Shin, J. T.

J. T. Shin and M. C. Fishman, “From zebrafish to human: modular medical models,” Annu. Rev. Genomics Hum. Genet. 3(1), 311–340 (2002).
[Crossref] [PubMed]

Shung, K. K.

Singer, A.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Soliman, D.

Song, C.

Spaink, H. P.

S. Kabli, S. He, H. P. Spaink, A. Hurlstone, E. S. Jagalska, H. J. De Groot, and A. Alia, “In vivo magnetic resonance imaging to detect malignant melanoma in adult zebrafish,” Zebrafish 7(2), 143–148 (2010).
[Crossref] [PubMed]

Steed, D.

R. A. Kruger, C. M. Kuzmiak, R. B. Lam, D. R. Reinecke, S. P. Del Rio, and D. Steed, “Dedicated 3D photoacoustic breast imaging,” Med. Phys. 40(11), 113301 (2013).
[Crossref] [PubMed]

Sun, J.

Talbot, W. S.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Thomson, M.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Traver, D.

D. M. Langenau, D. Traver, A. A. Ferrando, J. L. Kutok, J. C. Aster, J. P. Kanki, S. Lin, E. Prochownik, N. S. Trede, L. I. Zon, and A. T. Look, “Myc-induced T cell leukemia in transgenic zebrafish,” Science 299(5608), 887–890 (2003).
[Crossref] [PubMed]

Trede, N. S.

D. M. Langenau, D. Traver, A. A. Ferrando, J. L. Kutok, J. C. Aster, J. P. Kanki, S. Lin, E. Prochownik, N. S. Trede, L. I. Zon, and A. T. Look, “Myc-induced T cell leukemia in transgenic zebrafish,” Science 299(5608), 887–890 (2003).
[Crossref] [PubMed]

Valentini, G.

A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt. 16(10), 100502 (2011).
[Crossref] [PubMed]

Vinegoni, C.

D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. Köster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics 3(7), 412–417 (2009).
[Crossref]

Wang, L. V.

G. Li, L. Li, L. Zhu, J. Xia, and L. V. Wang, “Multiview Hilbert transformation for full-view photoacoustic computed tomography using a linear array,” J. Biomed. Opt. 20(6), 066010 (2015).
[Crossref] [PubMed]

L. V. Wang and S. Hu, “Photoacoustic tomography: in vivo imaging from organelles to organs,” Science 335(6075), 1458–1462 (2012).
[Crossref] [PubMed]

Weinstein, B. M.

S. Isogai, M. Horiguchi, and B. M. Weinstein, “The vascular anatomy of the developing zebrafish: an atlas of embryonic and early larval development,” Dev. Biol. 230(2), 278–301 (2001).
[Crossref] [PubMed]

Westerfield, M.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

White, R. M.

R. M. White, A. Sessa, C. Burke, T. Bowman, J. LeBlanc, C. Ceol, C. Bourque, M. Dovey, W. Goessling, C. E. Burns, and L. I. Zon, “Transparent adult zebrafish as a tool for in vivo transplantation analysis,” Cell Stem Cell 2(2), 183–189 (2008).
[Crossref] [PubMed]

Wilson, L. G.

K. D. Poss, L. G. Wilson, and M. T. Keating, “Heart regeneration in Zebrafish,” Science 298(5601), 2188–2190 (2002).
[Crossref] [PubMed]

Wu, L.

Xi, L.

L. Xi and H. Jiang, “High resolution three-dimensional photoacoustic imaging of human finger joints in vivo,” Appl. Phys. Lett. 107(6), 063701 (2015).
[Crossref]

L. Xi, C. Song, and H. Jiang, “Confocal photoacoustic microscopy using a single multifunctional lens,” Opt. Lett. 39(11), 3328–3331 (2014).
[Crossref] [PubMed]

L. Xi, S. R. Grobmyer, L. Wu, R. Chen, G. Zhou, L. G. Gutwein, J. Sun, W. Liao, Q. Zhou, H. Xie, and H. Jiang, “Evaluation of breast tumor margins in vivo with intraoperative photoacoustic imaging,” Opt. Express 20(8), 8726–8731 (2012).
[Crossref] [PubMed]

L. Xi, X. Li, L. Yao, S. Grobmyer, and H. Jiang, “Design and evaluation of a hybrid photoacoustic tomography and diffuse optical tomography system for breast cancer detection,” Med. Phys. 39(5), 2584–2594 (2012).
[Crossref] [PubMed]

Xia, J.

G. Li, L. Li, L. Zhu, J. Xia, and L. V. Wang, “Multiview Hilbert transformation for full-view photoacoustic computed tomography using a linear array,” J. Biomed. Opt. 20(6), 066010 (2015).
[Crossref] [PubMed]

Xie, H.

Xiong, J.

Yan, Y. L.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Yang, R.

Yao, L.

L. Xi, X. Li, L. Yao, S. Grobmyer, and H. Jiang, “Design and evaluation of a hybrid photoacoustic tomography and diffuse optical tomography system for breast cancer detection,” Med. Phys. 39(5), 2584–2594 (2012).
[Crossref] [PubMed]

Ye, S.

Yelick, P.

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Zabihian, B.

Zanella, C.

C. Zanella, M. Campana, B. Rizzi, C. Melani, G. Sanguinetti, P. Bourgine, K. Mikula, N. Peyrieras, and A. Sarti, “Cells segmentation from 3-D confocal images of early zebrafish embryogenesis,” IEEE Trans. Image Process. 19(3), 770–781 (2010).
[Crossref] [PubMed]

Zeqiri, B.

M. Fonseca, B. Zeqiri, P. C. Beard, and B. T. Cox, “Characterisation of a phantom for multiwavelength quantitative photoacoustic imaging,” Phys. Med. Biol. 61(13), 4950–4973 (2016).
[Crossref] [PubMed]

Zhou, G.

Zhou, Q.

Zhou, X.

M. Kamali, L. J. Day, D. H. Brooks, X. Zhou, and D. M. O’Malley, “Automated identification of neurons in 3D confocal datasets from zebrafish brainstem,” J. Microsc. 233(1), 114–131 (2009).
[Crossref] [PubMed]

Zhu, L.

G. Li, L. Li, L. Zhu, J. Xia, and L. V. Wang, “Multiview Hilbert transformation for full-view photoacoustic computed tomography using a linear array,” J. Biomed. Opt. 20(6), 066010 (2015).
[Crossref] [PubMed]

Zon, L. I.

R. M. White, A. Sessa, C. Burke, T. Bowman, J. LeBlanc, C. Ceol, C. Bourque, M. Dovey, W. Goessling, C. E. Burns, and L. I. Zon, “Transparent adult zebrafish as a tool for in vivo transplantation analysis,” Cell Stem Cell 2(2), 183–189 (2008).
[Crossref] [PubMed]

W. Goessling, T. E. North, and L. I. Zon, “Ultrasound biomicroscopy permits in vivo characterization of zebrafish liver tumors,” Nat. Methods 4(7), 551–553 (2007).
[Crossref] [PubMed]

D. M. Langenau, D. Traver, A. A. Ferrando, J. L. Kutok, J. C. Aster, J. P. Kanki, S. Lin, E. Prochownik, N. S. Trede, L. I. Zon, and A. T. Look, “Myc-induced T cell leukemia in transgenic zebrafish,” Science 299(5608), 887–890 (2003).
[Crossref] [PubMed]

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Annu. Rev. Genomics Hum. Genet. (1)

J. T. Shin and M. C. Fishman, “From zebrafish to human: modular medical models,” Annu. Rev. Genomics Hum. Genet. 3(1), 311–340 (2002).
[Crossref] [PubMed]

Appl. Phys. Lett. (1)

L. Xi and H. Jiang, “High resolution three-dimensional photoacoustic imaging of human finger joints in vivo,” Appl. Phys. Lett. 107(6), 063701 (2015).
[Crossref]

Biomed. Opt. Express (3)

C Embryo (1)

J. Hove, “In vivo biofluid dynamic imaging in the developing Zebrafish. Birth Defects Res,” C Embryo 72, 277–289 (2004).

Cell Stem Cell (1)

R. M. White, A. Sessa, C. Burke, T. Bowman, J. LeBlanc, C. Ceol, C. Bourque, M. Dovey, W. Goessling, C. E. Burns, and L. I. Zon, “Transparent adult zebrafish as a tool for in vivo transplantation analysis,” Cell Stem Cell 2(2), 183–189 (2008).
[Crossref] [PubMed]

Dev. Biol. (1)

S. Isogai, M. Horiguchi, and B. M. Weinstein, “The vascular anatomy of the developing zebrafish: an atlas of embryonic and early larval development,” Dev. Biol. 230(2), 278–301 (2001).
[Crossref] [PubMed]

IEEE Trans. Image Process. (1)

C. Zanella, M. Campana, B. Rizzi, C. Melani, G. Sanguinetti, P. Bourgine, K. Mikula, N. Peyrieras, and A. Sarti, “Cells segmentation from 3-D confocal images of early zebrafish embryogenesis,” IEEE Trans. Image Process. 19(3), 770–781 (2010).
[Crossref] [PubMed]

Int. Rev. Cell Mol. Biol. (1)

J. F. Amatruda and E. E. Patton, “Genetic models of cancer in zebrafish,” Int. Rev. Cell Mol. Biol. 271, 1–34 (2008).
[Crossref] [PubMed]

Interface Focus (1)

P. Beard, “Biomedical photoacoustic imaging,” Interface Focus 1(4), 602–631 (2011).
[Crossref] [PubMed]

J. Biomed. Opt. (2)

A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt. 16(10), 100502 (2011).
[Crossref] [PubMed]

G. Li, L. Li, L. Zhu, J. Xia, and L. V. Wang, “Multiview Hilbert transformation for full-view photoacoustic computed tomography using a linear array,” J. Biomed. Opt. 20(6), 066010 (2015).
[Crossref] [PubMed]

J. Microsc. (1)

M. Kamali, L. J. Day, D. H. Brooks, X. Zhou, and D. M. O’Malley, “Automated identification of neurons in 3D confocal datasets from zebrafish brainstem,” J. Microsc. 233(1), 114–131 (2009).
[Crossref] [PubMed]

Laser Photonics Rev. (1)

H. Lin, A. Chekkoury, M. Omar, T. Schmitt-Manderback, B. Koberstein-Schwarz, T. Mappes, H. Lopez-Schier, D. Razansky, and V. Ntziachristos, “Selective plane illumination optical and optoacoustic microscopy for postembryonic imaging,” Laser Photonics Rev. 9(5), L29–L34 (2015).
[Crossref]

Med. Phys. (2)

L. Xi, X. Li, L. Yao, S. Grobmyer, and H. Jiang, “Design and evaluation of a hybrid photoacoustic tomography and diffuse optical tomography system for breast cancer detection,” Med. Phys. 39(5), 2584–2594 (2012).
[Crossref] [PubMed]

R. A. Kruger, C. M. Kuzmiak, R. B. Lam, D. R. Reinecke, S. P. Del Rio, and D. Steed, “Dedicated 3D photoacoustic breast imaging,” Med. Phys. 40(11), 113301 (2013).
[Crossref] [PubMed]

Nat. Genet. (1)

J. H. Postlethwait, Y. L. Yan, M. A. Gates, S. Horne, A. Amores, A. Brownlie, A. Donovan, E. S. Egan, A. Force, Z. Gong, C. Goutel, A. Fritz, R. Kelsh, E. Knapik, E. Liao, B. Paw, D. Ransom, A. Singer, M. Thomson, T. S. Abduljabbar, P. Yelick, D. Beier, J. S. Joly, D. Larhammar, F. Rosa, M. Westerfield, L. I. Zon, S. L. Johnson, and W. S. Talbot, “Vertebrate genome evolution and the zebrafish gene map,” Nat. Genet. 18(4), 345–349 (1998).
[Crossref] [PubMed]

Nat. Methods (1)

W. Goessling, T. E. North, and L. I. Zon, “Ultrasound biomicroscopy permits in vivo characterization of zebrafish liver tumors,” Nat. Methods 4(7), 551–553 (2007).
[Crossref] [PubMed]

Nat. Photonics (1)

D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. Köster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics 3(7), 412–417 (2009).
[Crossref]

Neurobiol. Dis. (1)

O. Bandmann and E. A. Burton, “Genetic zebrafish models of neurodegenerative diseases,” Neurobiol. Dis. 40(1), 58–65 (2010).
[Crossref] [PubMed]

Opt. Express (2)

Opt. Lett. (2)

Phys. Med. Biol. (2)

M. Fonseca, B. Zeqiri, P. C. Beard, and B. T. Cox, “Characterisation of a phantom for multiwavelength quantitative photoacoustic imaging,” Phys. Med. Biol. 61(13), 4950–4973 (2016).
[Crossref] [PubMed]

R. Ma, M. Distel, X. L. Deán-Ben, V. Ntziachristos, and D. Razansky, “Non-invasive whole-body imaging of adult zebrafish with optoacoustic tomography,” Phys. Med. Biol. 57(22), 7227–7237 (2012).
[Crossref] [PubMed]

Science (3)

L. V. Wang and S. Hu, “Photoacoustic tomography: in vivo imaging from organelles to organs,” Science 335(6075), 1458–1462 (2012).
[Crossref] [PubMed]

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Zebrafish (2)

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[Crossref] [PubMed]

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[Crossref] [PubMed]

Supplementary Material (1)

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» Visualization 1: AVI (5234 KB)      Visualization 1

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Figures (6)

Fig. 1
Fig. 1 Experimental configuration of photoacoustic imaging system. OPO: Optical Parametric Oscillator M: Mirror BS: Beam Splitter L: Lens A: Amplifier Z: Zebrafish T: Transducer OF: Optical Fiber.
Fig. 2
Fig. 2 (a) The reconstructed image of the carbon fibers. (b) Lateral profile of the selected carbon fiber. (c) Axial profile of the selected carbon fiber.
Fig. 3
Fig. 3 Two selected PAT images of an adult (four-month-old) zebrafish head. B: Brain H: Heart V: Vertebrae P: Pharynx HM: Hypobranchial Musculature M: Musculature G: Gill.
Fig. 4
Fig. 4 Four typical anatomical slices of a zebrafish. M: muscle K: kidney L: liver S: stomach SB: swim bladder SP: spleen O: ovary F: fins (Visualization 1).
Fig. 5
Fig. 5 Four typical multispectral images of an entire zebrafish.
Fig. 6
Fig. 6 Quantitative multispectral analysis of major organs.

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